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unit tests

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dr. M.S. (Matthijs) Berends
2023-01-06 11:22:02 +01:00
parent 8a0a0d4682
commit 4801a6067e
5 changed files with 13 additions and 131 deletions
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42
.github/workflows/check-old.yaml vendored
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@ -47,11 +47,13 @@ jobs:
matrix:
config:
# Test all old versions of R >= 3.0, we support them all!
# For recent R versions, see check-recent.yaml (r-lib supports the latest 5 major R versions)
- {os: ubuntu-22.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.2', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
# For these old versions, dependencies will not be installed and checked.
# For recent R versions, see check-recent.yaml (r-lib and tidyverse support the latest 5 major R versions).
- {os: ubuntu-22.04, r: '3.4', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.2', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.1', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
@ -67,26 +69,10 @@ jobs:
- uses: r-lib/actions/setup-pandoc@v2
- name: Install Linux dependencies
if: runner.os == 'Linux'
# update the below with sysreqs::sysreqs("DESCRIPTION") and check the "DEB" entries (for Ubuntu).
# we don't want to depend on the sysreqs pkg here, as it requires quite a recent R version
# as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
- name: Install tinytest
run: |
sudo apt install -y libssl-dev libxml2-dev libcurl4-openssl-dev
- name: Restore cached R packages
# this step will add the step 'Post Restore cached R packages' on a succesful run
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ matrix.config.os }}-r-${{ matrix.config.r }}-v5
- name: Install R dependencies
if: always()
run: |
Rscript -e "source('data-raw/_install_deps.R')"
shell: bash
install.packages("tinytest")
shell: Rscript {0}
- name: Show session info
if: always()
@ -135,11 +121,3 @@ jobs:
cd ../AMR.Rcheck
find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
shell: bash
- name: Upload artifacts
if: always()
continue-on-error: true
uses: actions/upload-artifact@v3
with:
name: artifacts-${{ matrix.config.os }}-r${{ matrix.config.r }}
path: ${{ github.workspace }}.Rcheck

3
.github/workflows/check-recent.yaml vendored
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@ -66,8 +66,7 @@ jobs:
- {os: ubuntu-latest, r: '4.1', allowfail: false}
- {os: ubuntu-latest, r: '4.0', allowfail: false}
- {os: ubuntu-latest, r: '3.6', allowfail: false}
- {os: ubuntu-latest, r: '3.5', allowfail: false}
- {os: ubuntu-latest, r: '3.4', allowfail: false} # when a new R releases, this one has to move to check-old.yaml
- {os: ubuntu-latest, r: '3.5', allowfail: false} # when a new R releases, this one has to move to check-old.yaml
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}