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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9118</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9119</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,43 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.125 0.25 0.0625 0.125 8 4 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 0.002 0.25 16 64 4 128 32 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.125 0.125 0.005 64 0.0625 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 4 64 0.5 2 0.025 0.25 8 0.0625 0.001 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 32 1 0.25 0.25 0.125 0.025 >=128 32 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 32 16 8 >=128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 22 23 44 40 29 7 32 41 7 34 43 37 46 44 49 48 6 13 49 42 12 49 47 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 9 12 29 26 27 48 37 36 32 47 34 44 20 36 38 12 50 48 16 34 50 34 42 44 29</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S S R I S I R I I R S R I I S S I I I S I I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R I S I R I S I R I S I I S I S S R R S I R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.025 0.01 16 4 0.025 64 128 128 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.125 16 0.125 0.5 0.005 0.25 16 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 64 0.002 1 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 256 32 0.5 0.125 4 0.25 0.002 0.01 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 1 0.005 16 32 0.0625 0.0625 0.125 1 4 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 128 4 2 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 8 2 16 >=32 2 0.5 >=32 8 16 0.25 4 4 16 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=32 1 1 0.25 >=32 1 2 1 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 8 4 32 32 4 2 16 32 8 4 4 2 4 16 2 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 4 4 32 <=1 16 <=1</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.5 2 0.125 0.25 >=16 >=16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 8 0.25 8 1 0.25 0.5 <=0.0625 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 8 0.125 4 8 8 >=16 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 4 0.25 0.0625 4 0.125 0.125 1 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 1 0.0625 0.125 8 4 0.5 2 0.5 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.25 0.5 0.5 4 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 25 45 40 20 17 33 24 9 28 19 49 44 12 50 27 12 48 29 49 9 41 45 23 41</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 10 48 23 44 36 40 20 21 39 13 43 50 24 24 41 18 22 37 40 22 45 29 13 44 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 12 12 16 11 11 15 17 14 17 14 11 12 14 15 14 16 11 14 15 11 12 16 13 11</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 15 12 16 13 15 12 13 16 17 14 14 14 12 15 13 14 12 17 13 13 16 11 11 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 18 25 24 18 19 15 21 25 20 15 17 21 22 26 19 16 26 19 19 19 19 26 27 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 27 21 20 16 17 19 26 25 25 18 21 18 16 24 27 24 23 24 16 15 22 24 24 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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