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(v3.0.0.9014) fix plot colours

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dr. M.S. (Matthijs) Berends
2025-07-18 15:57:48 +02:00
parent 8da0f525b5
commit 49274f010b
7 changed files with 91 additions and 64 deletions
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10
man/plot.Rd
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@ -210,6 +210,10 @@ if (require("ggplot2")) {
# when providing the microorganism and antibiotic, colours will show interpretations:
autoplot(some_mic_values, mo = "Escherichia coli", ab = "cipro")
}
if (require("ggplot2")) {
autoplot(some_mic_values, mo = "Staph aureus", ab = "Ceftaroline", guideline = "CLSI")
}
if (require("ggplot2")) {
# support for 27 languages, various guidelines, and many options
autoplot(some_disk_values,
@ -267,7 +271,7 @@ if (require("ggplot2")) {
aes(group, mic)
) +
geom_boxplot() +
geom_violin(linetype = 2, colour = "grey", fill = NA) +
geom_violin(linetype = 2, colour = "grey30", fill = NA) +
scale_y_mic()
}
if (require("ggplot2")) {
@ -279,7 +283,7 @@ if (require("ggplot2")) {
aes(group, mic)
) +
geom_boxplot() +
geom_violin(linetype = 2, colour = "grey", fill = NA) +
geom_violin(linetype = 2, colour = "grey30", fill = NA) +
scale_y_mic(mic_range = c(NA, 0.25))
}
@ -312,7 +316,7 @@ if (require("ggplot2")) {
aes(x = group, y = mic, colour = sir)
) +
theme_minimal() +
geom_boxplot(fill = NA, colour = "grey") +
geom_boxplot(fill = NA, colour = "grey30") +
geom_jitter(width = 0.25)
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