(v2.1.1.9244) automated GPT training data

.github/workflows/renew-gpt-training-data.yml

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+# ==================================================================== #
+# TITLE:                                                               #
+# AMR: An R Package for Working with Antimicrobial Resistance Data     #
+#                                                                      #
+# SOURCE CODE:                                                         #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# PLEASE CITE THIS SOFTWARE AS:                                        #
+# Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
+# AMR: An R Package for Working with Antimicrobial Resistance Data.    #
+# Journal of Statistical Software, 104(3), 1-31.                       #
+# https://doi.org/10.18637/jss.v104.i03                                #
+#                                                                      #
+# Developed at the University of Groningen and the University Medical  #
+# Center Groningen in The Netherlands, in collaboration with many      #
+# colleagues from around the world, see our website.                   # 
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://amr-for-r.org              #
+# ==================================================================== #
+
+on:
+  push:
+    # only on main
+    branches: "main"
+
+name: Publish GPT Training Data to GitHub
+
+jobs:
+  update-pypi:
+    runs-on: ubuntu-latest
+    
+    env:
+      PYPI_PAT: ${{ secrets.PYPI_PAT }}
+    
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+      
+      - name: Build the training data
+        run: |
+          cd data-raw/
+          bash _generate_GPT_knowledge_input.sh
+
+      - name: Git push to amr-for-r-assistant repo
+        run: |
+          mkdir ~/other
+          # to also mv hidden files:
+          shopt -s dotglob
+          mv ./* ~/other/
+          git clone https://github.com/msberends/amr-for-r-assistant
+          cd amr-for-r-assistant
+          mv ~/other/data-raw/latest_training_data.txt ./
+          
+          git config user.name "github-actions[bot]"
+          git config user.email "github-actions[bot]@users.noreply.github.com"
+          git add latest_training_data.txt
+          git commit -m "GPT training data update"
+          git push https://$PYPI_PAT@github.com/msberends/amr-for-r-assistant.git main --force