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(v0.6.1.9044) first_isolate fix for species

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dr. M.S. (Matthijs) Berends
2019-05-31 14:25:11 +02:00
parent 1f8ee3ec3e
commit 493ae2ba0c
121 changed files with 586 additions and 521 deletions
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docs/reference/age.html
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@ -80,7 +80,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9040</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9044</span>
</span>
</div>
@ -248,7 +248,7 @@
</div>
<pre class="usage"><span class='fu'>age</span>(<span class='no'>x</span>, <span class='kw'>reference</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Sys.time'>Sys.Date</a></span>())</pre>
<pre class="usage"><span class='fu'>age</span>(<span class='no'>x</span>, <span class='kw'>reference</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Sys.time'>Sys.Date</a></span>(), <span class='kw'>exact</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
@ -261,16 +261,20 @@
<th>reference</th>
<td><p>reference date(s) (defaults to today), will be coerced with <code><a href='https://www.rdocumentation.org/packages/base/topics/as.POSIXlt'>as.POSIXlt</a></code> and cannot be lower than <code>x</code></p></td>
</tr>
<tr>
<th>exact</th>
<td><p>a logical to indicate whether age calculation should be exact, i.e. with decimals</p></td>
</tr>
</table>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
<p>Integer (no decimals)</p>
<p>An integer (no decimals) if <code>exact = FALSE</code>, a double (with decimals) otherwise</p>
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
<p>On our website <a href='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <a href='https://msberends.gitlab.io/AMR/articles/AMR.html'>a comprehensive tutorial</a> about how to conduct AMR analysis, the <a href='https://msberends.gitlab.io/AMR/reference'>complete documentation of all functions</a> (which reads a lot easier than here in R) and <a href='https://msberends.gitlab.io/AMR/articles/WHONET.html'>an example analysis using WHONET data</a>.</p>
<p>On our website <a href='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <a href='https://msberends.gitlab.io/AMR/articles/AMR.html'>a tutorial</a> about how to conduct AMR analysis, the <a href='https://msberends.gitlab.io/AMR/reference'>complete documentation of all functions</a> (which reads a lot easier than here in R) and <a href='https://msberends.gitlab.io/AMR/articles/WHONET.html'>an example analysis using WHONET data</a>.</p>
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
@ -279,8 +283,14 @@
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='co'># NOT RUN {</span>
<span class='no'>df</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span>(<span class='kw'>birth_date</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Sys.time'>Sys.Date</a></span>() - <span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/Uniform'>runif</a></span>(<span class='fl'>100</span>) * <span class='fl'>25000</span>)
<span class='co'># 10 random birth dates</span>
<span class='no'>df</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/data.frame'>data.frame</a></span>(<span class='kw'>birth_date</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/Sys.time'>Sys.Date</a></span>() - <span class='fu'><a href='https://www.rdocumentation.org/packages/stats/topics/Uniform'>runif</a></span>(<span class='fl'>10</span>) * <span class='fl'>25000</span>)
<span class='co'># add ages</span>
<span class='no'>df</span>$<span class='no'>age</span> <span class='kw'>&lt;-</span> <span class='fu'>age</span>(<span class='no'>df</span>$<span class='no'>birth_date</span>)
<span class='co'># add exact ages</span>
<span class='no'>df</span>$<span class='no'>age_exact</span> <span class='kw'>&lt;-</span> <span class='fu'>age</span>(<span class='no'>df</span>$<span class='no'>birth_date</span>, <span class='kw'>exact</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='no'>df</span>
<span class='co'># }</span></pre>
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