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Implement extensive support for antiviral agents support (#77)

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Dr. Matthijs Berends
2022-11-13 08:46:10 +01:00
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parent d2edcf51ad
commit 496c08d851
46 changed files with 1966 additions and 1563 deletions
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10
man/antibiotics.Rd
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@ -4,7 +4,7 @@
\name{antibiotics}
\alias{antibiotics}
\alias{antivirals}
\title{Data Sets with 585 Antimicrobial Drugs}
\title{Data Sets with 603 Antimicrobial Drugs}
\format{
\subsection{For the \link{antibiotics} data set: a \link[tibble:tibble]{tibble} with 483 observations and 14 variables:}{
\itemize{
@ -25,21 +25,23 @@
}
}
\subsection{For the \link{antivirals} data set: a \link[tibble:tibble]{tibble} with 102 observations and 9 variables:}{
\subsection{For the \link{antivirals} data set: a \link[tibble:tibble]{tibble} with 120 observations and 11 variables:}{
\itemize{
\item \code{av}\cr Antibiotic ID as used in this package (such as \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available
\item \code{name}\cr Official name as used by WHONET/EARS-Net or the WHO
\item \code{atc}\cr ATC codes (Anatomical Therapeutic Chemical) as defined by the WHOCC
\item \code{cid}\cr Compound ID as found in PubChem
\item \code{name}\cr Official name as used by WHONET/EARS-Net or the WHO
\item \code{atc_group}\cr Official pharmacological subgroup (3rd level ATC code) as defined by the WHOCC
\item \code{synonyms}\cr Synonyms (often trade names) of a drug, as found in PubChem based on their compound ID
\item \code{oral_ddd}\cr Defined Daily Dose (DDD), oral treatment
\item \code{oral_units}\cr Units of \code{oral_ddd}
\item \code{iv_ddd}\cr Defined Daily Dose (DDD), parenteral treatment
\item \code{iv_units}\cr Units of \code{iv_ddd}
\item \code{loinc}\cr All LOINC codes (Logical Observation Identifiers Names and Codes) associated with the name of the antimicrobial agent.
}
}
An object of class \code{tbl_df} (inherits from \code{tbl}, \code{data.frame}) with 102 rows and 9 columns.
An object of class \code{tbl_df} (inherits from \code{tbl}, \code{data.frame}) with 120 rows and 11 columns.
}
\source{
\itemize{