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improvement for forecasting resistance

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dr. M.S. (Matthijs) Berends
2018-07-26 16:30:42 +02:00
parent d9e204031d
commit 498e88b5cf
13 changed files with 438 additions and 145 deletions
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6
man/first_isolate.Rd
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@ -92,13 +92,13 @@ A <- my_patients \%>\%
resistance = resistance(gent))
B <- my_patients \%>\%
filter(first_isolate == TRUE) \%>\%
filter(first_isolate == TRUE) \%>\% # the 1st isolate filter
group_by(hospital_id) \%>\%
summarise(count = n_rsi(gent), # gentamicin
summarise(count = n_rsi(gent),
resistance = resistance(gent))
# Have a look at A and B. B is more reliable because every isolate is
# counted once. Gentamicin resitance in hospital D seems to be 5\%
# counted once. Gentamicin resitance in hospital D appears to be 5\%
# higher than originally thought.
## OTHER EXAMPLES: