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@ -314,19 +314,19 @@ Unique: 2</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S I I S I S</span></span>
<span><span class="co"># 2 R I I R R R</span></span>
<span><span class="co"># 3 S I S S S R</span></span>
<span><span class="co"># 4 R S R I R S</span></span>
<span><span class="co"># 5 I R I I R I</span></span>
<span><span class="co"># 6 S I I S I S</span></span>
<span><span class="co"># 1 S R R I R I</span></span>
<span><span class="co"># 2 R I I R I R</span></span>
<span><span class="co"># 3 I S I S I S</span></span>
<span><span class="co"># 4 I I I R I I</span></span>
<span><span class="co"># 5 S S R S R I</span></span>
<span><span class="co"># 6 I S R R I R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 S</span></span></code></pre></div>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="../reference/mdro.html">mdro</a></span><span class="op">(</span><span class="va">my_TB_data</span>, guideline <span class="op">=</span> <span class="st">"TB"</span><span class="op">)</span></span></code></pre></div>
@ -357,40 +357,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3202</td>
<td align="right">64.04%</td>
<td align="right">3202</td>
<td align="right">64.04%</td>
<td align="right">3234</td>
<td align="right">64.68%</td>
<td align="right">3234</td>
<td align="right">64.68%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">995</td>
<td align="right">19.90%</td>
<td align="right">4197</td>
<td align="right">83.94%</td>
<td align="right">984</td>
<td align="right">19.68%</td>
<td align="right">4218</td>
<td align="right">84.36%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">443</td>
<td align="right">8.86%</td>
<td align="right">4640</td>
<td align="right">92.80%</td>
<td align="right">447</td>
<td align="right">8.94%</td>
<td align="right">4665</td>
<td align="right">93.30%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">260</td>
<td align="right">5.20%</td>
<td align="right">4900</td>
<td align="right">98.00%</td>
<td align="right">236</td>
<td align="right">4.72%</td>
<td align="right">4901</td>
<td align="right">98.02%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">100</td>
<td align="right">2.00%</td>
<td align="right">99</td>
<td align="right">1.98%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>