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@ -38,7 +38,7 @@
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@ -375,18 +375,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I S I S R S</span></span>
<span><span class="co"># 2 S S R S R S</span></span>
<span><span class="co"># 3 I R S I R I</span></span>
<span><span class="co"># 4 R R S S R S</span></span>
<span><span class="co"># 5 S R R S I R</span></span>
<span><span class="co"># 6 I I I S I I</span></span>
<span><span class="co"># 1 R S R S I S</span></span>
<span><span class="co"># 2 R S S S I R</span></span>
<span><span class="co"># 3 R R R S I S</span></span>
<span><span class="co"># 4 S S I S I R</span></span>
<span><span class="co"># 5 R S I I R R</span></span>
<span><span class="co"># 6 R R S I S S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3249</td>
<td align="right">64.98%</td>
<td align="right">3249</td>
<td align="right">64.98%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">983</td>
<td align="right">19.66%</td>
<td align="right">4177</td>
<td align="right">83.54%</td>
<td align="right">936</td>
<td align="right">18.72%</td>
<td align="right">4185</td>
<td align="right">83.70%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">492</td>
<td align="right">9.84%</td>
<td align="right">4669</td>
<td align="right">93.38%</td>
<td align="right">465</td>
<td align="right">9.30%</td>
<td align="right">4650</td>
<td align="right">93.00%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">235</td>
<td align="right">4.70%</td>
<td align="right">4904</td>
<td align="right">98.08%</td>
<td align="right">249</td>
<td align="right">4.98%</td>
<td align="right">4899</td>
<td align="right">97.98%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">96</td>
<td align="right">1.92%</td>
<td align="right">101</td>
<td align="right">2.02%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>