P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-05 03:29:43 +02:00
Code Releases Activity

extra unit tests, add row.names to freq

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-06-19 15:20:14 +02:00
parent bdc860e29c
commit 4a027f3c34
8 changed files with 77 additions and 25 deletions
Download Patch File Download Diff File Expand all files Collapse all files

9
NEWS.md
View File

@@ -4,9 +4,12 @@
* Added possibility to globally set the default for the amount of items to print in frequency tables (`freq` function), with `options(max.print.freq = n)`
* Renamed `toConsole` parameter of `freq` function to `as.data.frame`
* Small translational improvements to the `septic_patients` dataset
* Combined MIC/RSI values will now be coerced by the `rsi` and `mic` functions: `as.rsi("<=0.002; S")` will return `S` and `as.mic("<=0.002; S")` will return `<=0.002`
* It is now possible to coerce MIC values when there's a space between the operator and the value, i.e. `as.mic("<= 0.002")` now works
* Added `"groups"` option for `atc_property(..., property)`. It will return a vector of the ATC hierarchy as defined by the [WHO](https://www.whocc.no/atc/structure_and_principles/). The new function `atc_groups` is a convenient wrapper around this. * Build-in host check for `atc_property` as it requires the host set by `url` to be responsive
* Combined MIC/RSI values will now be coerced by the `rsi` and `mic` functions:
* `as.rsi("<=0.002; S")` will return `S`
* `as.mic("<=0.002; S")` will return `<=0.002`
* Now possible to coerce MIC values with a space between operator and value, i.e. `as.mic("<= 0.002")` now works
* Added `"groups"` option for `atc_property(..., property)`. It will return a vector of the ATC hierarchy as defined by the [WHO](https://www.whocc.no/atc/structure_and_principles/). The new function `atc_groups` is a convenient wrapper around this.
* Build-in host check for `atc_property` as it requires the host set by `url` to be responsive
* Improved `first_isolate` algorithm to exclude isolates where bacteria ID or genus is unavailable
* Fix for warning *hybrid evaluation forced for row_number* ([`924b62`](https://github.com/tidyverse/dplyr/commit/924b62)) from the `dplyr` package v0.7.5 and above
* Support for 1 or 2 columns as input for `guess_bactid`