P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-02 19:44:04 +02:00
Code Releases Activity

(v2.1.1.9276) mdro() fix

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-05-15 10:39:48 +02:00
parent 48a59ee31a
commit 4b171745de
14 changed files with 64 additions and 94 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
man/key_antimicrobials.Rd
View File

@@ -13,9 +13,9 @@ key_antimicrobials(x = NULL, col_mo = NULL, universal = c("ampicillin",
"ceftazidime", "meropenem"), gram_positive = c("vancomycin", "teicoplanin",
"tetracycline", "erythromycin", "oxacillin", "rifampin"),
antifungal = c("anidulafungin", "caspofungin", "fluconazole", "miconazole",
"nystatin", "voriconazole"), only_sir_columns = FALSE, ...)
"nystatin", "voriconazole"), only_sir_columns = any(is.sir(x)), ...)
all_antimicrobials(x = NULL, only_sir_columns = FALSE, ...)
all_antimicrobials(x = NULL, only_sir_columns = any(is.sir(x)), ...)
antimicrobials_equal(y, z, type = c("points", "keyantimicrobials"),
ignore_I = TRUE, points_threshold = 2, ...)
@@ -33,7 +33,7 @@ antimicrobials_equal(y, z, type = c("points", "keyantimicrobials"),
\item{antifungal}{Names of antifungal drugs for \strong{fungi}, case-insensitive. Set to \code{NULL} to ignore. See \emph{Details} for the default antifungal drugs.}
\item{only_sir_columns}{A \link{logical} to indicate whether only columns must be included that were transformed to class \code{sir} (see \code{\link[=as.sir]{as.sir()}}) on beforehand (default is \code{FALSE}).}
\item{only_sir_columns}{A \link{logical} to indicate whether only antimicrobial columns must be included that were transformed to class \link[=as.sir]{sir} on beforehand. Defaults to \code{FALSE} if no columns of \code{x} have a class \link[=as.sir]{sir}.}
\item{...}{Ignored, only in place to allow future extensions.}