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(v2.1.1.9276) mdro() fix

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dr. M.S. (Matthijs) Berends
2025-05-15 10:39:48 +02:00
parent 48a59ee31a
commit 4b171745de
14 changed files with 64 additions and 94 deletions
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4
tests/testthat/test-mdro.R
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@ -286,6 +286,10 @@ test_that("test-mdro.R", {
colnames(suppressWarnings(mdro(example_isolates[1:10, ], verbose = TRUE, info = FALSE))),
c("row_number", "microorganism", "MDRO", "reason", "all_nonsusceptible_columns", "guideline")
)
expect_equal(
colnames(suppressWarnings(mdro(example_isolates[1:10, ], verbose = TRUE, info = FALSE, guideline = custom_mdro_guideline(AMX == "R" ~ "Positive")))),
c("row_number", "microorganism", "MDRO", "reason", "all_nonsusceptible_columns", "guideline")
)
# print groups
if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {