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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9050</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9051</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.125 128 8 128 0.25 0.025 0.005 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 64 2 0.005 32 0.005 8 128 0.01 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 128 0.025 1 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 0.01 32 1 8 4 0.001 0.01 0.001 >=256 0.125 0.002</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 128 0.002 0.125 16 >=256 0.5 0.01 0.025 0.5 16 >=256 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 47 14 38 23 43 26 25 47 42 19 43 37 27 11 28 48 21 28 43 35 44 26 31 30</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 37 41 7 16 27 11 6 46 21 9 47 6 17 37 39 40 39 41 12 25 50 42 29 14</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R R S S R I S I S S I S R R I R S I S R I R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S I I R S R S S I I R I R I R S S S S S I I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 32 0.002 0.002 0.5 0.01 1 0.5 128 128 0.005 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 4 1 4 16 8 0.002 >=256 0.01 128 1 0.025 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=256</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=128 4 0.01 0.25 0.005 0.01 0.25 0.01 >=128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 <=0.001 2 32 2 8 4 >=128 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 32 8 >=128 4 64 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 16 8 2 4 0.5 4 2 >=32 >=32 0.5 0.5 8 1 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 >=32 16 1 16 0.5 8 >=32 1 >=32</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 8 >=64 32 4 >=64 16 >=64 2 32 >=64 >=64 4 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=64 8 4 4 8 32 >=64 2 16 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 1 2 0.5 2 1 >=4 2 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 0.0625 0.0625 2 2 1 0.125 2 >=4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 1 0.5 1 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 8 8 16 8 8 4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] <=0.0625 16 16 8 16 0.5 8 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] 4 <=0.0625 1 1 1 0.5 <=0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 46 50 15 25 18 23 38 45 50 22 25 50 42 13 47 9 45 26 43 17 10 45 45 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 29 24 16 48 36 18 44 16 9 28 50 15 50 35 23 12 11 19 35 50 35 35 33 35 46</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 11 11 14 15 15 16 15 15 16 15 17 12 17 15 17 16 14 13 11 16 11 11 13 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 14 12 14 14 17 16 17 12 15 14 12 14 11 15 12 15 12 11 14 16 15 16 13 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 27 21 15 25 19 18 21 16 16 23 16 23 15 16 24 20 27 17 17 19 22 24 17 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 20 18 23 20 22 24 23 18 27 23 27 26 26 17 21 21 19 23 17 26 25 18 25 18</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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