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Try to support older R versions

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dr. M.S. (Matthijs) Berends
2018-04-18 15:19:00 +02:00
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NEWS.md
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## 0.2.0
# 0.2.0
#### New
- Full support for Windows, Linux and macOS
- Function `guess_bactid` to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Function `MDRO` to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via https://github.com/msberends/AMR/issues/new. Functions `BRMO` and `MRGN` are wrappers for Dutch and German guidelines, respectively
- Function `freq` to create frequency tables, with additional info in a header
- New algorithm to determine weighted isolates, can now be `"points"` or `"keyantibiotics"`, see `?first_isolate`
- New print format for tibbles and data.tables
* Full support for Windows, Linux and macOS
* Function `guess_bactid` to determine the ID of a microorganism based on genus/species or known abbreviations like MRSA
* Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
* Function `MDRO` to determine Multi Drug Resistant Organisms (MDRO) with support for country-specific guidelines. Suggest your own via [this link](https://github.com/msberends/AMR/issues/new?title=New%20guideline%20for%20MDRO&body=%3C--%20Please%20add%20your%20country%20code,%20guideline%20name,%20version%20and%20source%20below%20and%20remove%20this%20line--%3E). Functions `BRMO` and `MRGN` are wrappers for Dutch and German guidelines, respectively
* Function `freq` to create frequency tables, with additional info in a header
* New algorithm to determine weighted isolates, can now be `"points"` or `"keyantibiotics"`, see `?first_isolate`
* New print format for tibbles and data.tables
#### Changed
- Support for older R versions, only R 3.1.0 and later is needed
- Renamed dataset `ablist` to `antibiotics`
- Renamed dataset `bactlist` to `microorganisms`
- Added more microorganisms to `bactlist`
- Added analysis examples on help page of dataset `septic_patients`
- Added support for character vector in `join` functions
- Added warnings when a join results in more rows after than before the join
- Altered `%like%` to make it case insensitive
- For parameters of functions `first_isolate` and `EUCAST_rules` the column names are now case-insensitive
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
* Support for older R versions, only R 3.1.0 and later is needed
* Renamed dataset `ablist` to `antibiotics`
* Renamed dataset `bactlist` to `microorganisms`
* Added more microorganisms to `bactlist`
* Added analysis examples on help page of dataset `septic_patients`
* Added support for character vector in `join` functions
* Added warnings when a join results in more rows after than before the join
* Altered `%like%` to make it case insensitive
* For parameters of functions `first_isolate` and `EUCAST_rules` the column names are now case-insensitive
* Functions `as.rsi` and `as.mic` now add the package name and version as attribute
#### Other
- Expanded README.md with more examples
- Added ORC IDs of authors to DESCRIPTION file
- Added unit testing with the `testthat` package
- Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
- Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
* Expanded README.md with more examples
* Added ORC IDs of authors to DESCRIPTION file
* Added unit testing with the `testthat` package
* Added build tests for Linux and macOS using Travis CI (https://travis-ci.org/msberends/AMR)
* Added Line coverage checking using CodeCov (https://codecov.io/gh/msberends/AMR/tree/master/R)
## 0.1.1
- `EUCAST_rules` applies for amoxicillin even if ampicillin is missing
- Edited column names to comply with GLIMS, the laboratory information system
- Added more valid MIC values
- Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
- Added barplots for `rsi` and `mic` classes
# 0.1.1
* `EUCAST_rules` applies for amoxicillin even if ampicillin is missing
* Edited column names to comply with GLIMS, the laboratory information system
* Added more valid MIC values
* Renamed 'Daily Defined Dose' to 'Defined Daily Dose'
* Added barplots for `rsi` and `mic` classes
## 0.1.0
- First submission to CRAN.
# 0.1.0
* First submission to CRAN.