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(v1.0.1.9008) RIVM abbreviations for drugs

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dr. M.S. (Matthijs) Berends
2020-04-14 20:38:09 +02:00
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commit 4be54d608c
23 changed files with 346 additions and 149 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.1.9007</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.0.1.9008</span>
</span>
</div>
@ -229,9 +229,9 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1019007" class="section level1">
<h1 class="page-header" data-toc-text="1.0.1.9007">
<a href="#amr-1019007" class="anchor"></a>AMR 1.0.1.9007<small> Unreleased </small>
<div id="amr-1019008" class="section level1">
<h1 class="page-header" data-toc-text="1.0.1.9008">
<a href="#amr-1019008" class="anchor"></a>AMR 1.0.1.9008<small> Unreleased </small>
</h1>
<div id="last-updated-14-apr-2020" class="section level2">
<h2 class="hasAnchor">
@ -259,6 +259,7 @@
<li>Small fix for preventing contamination and lack of growth being treated as valid microorganisms</li>
</ul>
</li>
<li>Support for all abbreviations of antibiotics and antimycotics used by the Netherlands National Institute for Public Health and the Environment (Rijksinstituut voor Volksgezondheid en Milieu; RIVM)</li>
<li>Added more abbreviations to the <code>antibiotics</code> data set</li>
<li>Reloaded original EUCAST master tables from 2019 (2020 was already available). This seems more reliable than the data we used from WHONET.</li>
<li>Added generic CLSI rules for R/SI interpretation using <code><a href="../reference/as.rsi.html">as.rsi()</a></code> for years 2010-2019 (thanks to Anthony Underwood)</li>