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(v1.0.1.9008) RIVM abbreviations for drugs

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dr. M.S. (Matthijs) Berends
2020-04-14 20:38:09 +02:00
parent cde65141d9
commit 4be54d608c
23 changed files with 346 additions and 149 deletions
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10
man/antibiotics.Rd
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@ -4,9 +4,9 @@
\name{antibiotics}
\alias{antibiotics}
\alias{antivirals}
\title{Data sets with 554 antimicrobials}
\title{Data sets with 557 antimicrobials}
\format{
\subsection{For the \link{antibiotics} data set: a \code{\link{data.frame}} with 452 observations and 14 variables:}{
\subsection{For the \link{antibiotics} data set: a \code{\link{data.frame}} with 455 observations and 14 variables:}{
\itemize{
\item \code{ab}\cr Antibiotic ID as used in this package (like \code{AMC}), using the official EARS-Net (European Antimicrobial Resistance Surveillance Network) codes where available
\item \code{atc}\cr ATC code (Anatomical Therapeutic Chemical) as defined by the WHOCC, like \code{J01CR02}
@ -67,6 +67,12 @@ These data sets are available as 'flat files' for use even without R - you can f
\item \url{https://gitlab.com/msberends/AMR/raw/master/data-raw/antibiotics.txt}
\item \url{https://gitlab.com/msberends/AMR/raw/master/data-raw/antivirals.txt}
}
Files in R format (which data structure) can be found here:
\itemize{
\item \url{https://gitlab.com/msberends/AMR/raw/master/data/antibiotics.rda}
\item \url{https://gitlab.com/msberends/AMR/raw/master/data/antivirals.rda}
}
}
}
\section{WHOCC}{

5
man/microorganisms.Rd
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@ -47,6 +47,11 @@ This data set is available as 'flat file' for use even without R - you can find
\itemize{
\item \url{https://gitlab.com/msberends/AMR/raw/master/data-raw/microorganisms.txt}
}
The file in R format (which data structure) can be found here:
\itemize{
\item \url{https://gitlab.com/msberends/AMR/raw/master/data/microorganisms.rda}
}
}
}
\section{About the records from DSMZ (see source)}{