P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-08 20:02:04 +02:00
Code Releases Activity

ab_info, other bug fixes

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-05-16 21:20:00 +02:00
parent f6bf54b37d
commit 4c3cf85a65
57 changed files with 519 additions and 430 deletions
Download Patch File Download Diff File Expand all files Collapse all files

1
R/mo.R
View File

@ -349,6 +349,7 @@ exec_as.mo <- function(x,
# conversion of old MO codes from v0.5.0 (ITIS) to later versions (Catalogue of Life)
if (any(x %like% "^[BFP]_[A-Z]{3,7}") & !all(x %in% microorganisms$mo)) {
x <- gsub("^F_CANDD_GLB$", "F_CANDD_GLA", x) # specific old code for C. glabrata
leftpart <- gsub("^([BFP]_[A-Z]{3,7}).*", "\\1", x)
if (any(leftpart %in% names(mo_codes_v0.5.0))) {
rightpart <- gsub("^[BFP]_[A-Z]{3,7}(.*)", "\\1", x)