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ab_info, other bug fixes

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dr. M.S. (Matthijs) Berends
2019-05-16 21:20:00 +02:00
parent f6bf54b37d
commit 4c3cf85a65
57 changed files with 519 additions and 430 deletions
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10
man/ab_property.Rd
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@ -23,11 +23,11 @@ ab_synonyms(x, ...)
ab_tradenames(x, ...)
ab_group(x, ...)
ab_group(x, language = get_locale(), ...)
ab_atc_group1(x, ...)
ab_atc_group1(x, language = get_locale(), ...)
ab_atc_group2(x, ...)
ab_atc_group2(x, language = get_locale(), ...)
ab_ddd(x, administration = "oral", units = FALSE, ...)
@ -51,7 +51,7 @@ ab_property(x, property = "name", language = get_locale(), ...)
\value{
\itemize{
\item{An \code{integer} in case of \code{ab_cid}}
\item{A named \code{list} in case of multiple \code{ab_synonyms}}
\item{A named \code{list} in case of \code{ab_info} and multiple \code{ab_synonyms}/\code{ab_tradenames}}
\item{A \code{double} in case of \code{ab_ddd}}
\item{A \code{character} in all other cases}
}
@ -98,6 +98,8 @@ ab_ddd("AMX", "oral", units = TRUE) # "g"
ab_ddd("AMX", "iv") # 1
ab_ddd("AMX", "iv", units = TRUE) # "g"
ab_info("AMX") # all properties as a list
# all ab_* functions use as.ab() internally:
ab_name("Fluclox") # "Flucloxacillin"
ab_name("fluklox") # "Flucloxacillin"

5
man/as.ab.Rd
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@ -2,9 +2,12 @@
% Please edit documentation in R/ab.R
\name{as.ab}
\alias{as.ab}
\alias{is.ab}
\title{Transform to antibiotic ID}
\usage{
as.ab(x)
is.ab(x)
}
\arguments{
\item{x}{character vector to determine to antibiotic ID}
@ -56,7 +59,7 @@ as.ab("eryt")
as.ab(" eryt 123")
as.ab("ERYT")
as.ab("ERY")
as.ab("erytromicine") # spelled wrong
as.ab("eritromicine") # spelled wrong, yet works
as.ab("Erythrocin") # trade name
as.ab("Romycin") # trade name

9
man/as.atc.Rd
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@ -1,14 +1,11 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/ab.R, R/atc.R
\name{is.ab}
\alias{is.ab}
% Please edit documentation in R/atc.R
\name{as.atc}
\alias{as.atc}
\alias{atc}
\alias{is.atc}
\title{Transform to ATC code}
\usage{
is.ab(x)
as.atc(x)
is.atc(x)
@ -17,7 +14,7 @@ is.atc(x)
\item{x}{character vector to determine \code{ATC} code}
}
\value{
Character (vector) with class \code{"act"}. Unknown values will return \code{NA}.
Character (vector) with class \code{"atc"}. Unknown values will return \code{NA}.
}
\description{
Use this function to determine the ATC code of one or more antibiotics. The data set \code{\link{antibiotics}} will be searched for abbreviations, official names and trade names.