From 4ca7fdf3d48d8f105e9dbeeda611f114a6839970 Mon Sep 17 00:00:00 2001
From: Matthijs Berends <m.s.berends@umcg.nl>
Date: Fri, 26 Jun 2026 11:51:08 +0200
Subject: [PATCH] (v3.0.1.9073) yet another go

---
 DESCRIPTION                          |  2 +-
 NEWS.md                              |  2 +-
 data-raw/_generate_python_wrapper.sh | 18 ++++++++++++++++--
 3 files changed, 18 insertions(+), 4 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 6f5d69684..c6e580c85 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: AMR
-Version: 3.0.1.9072
+Version: 3.0.1.9073
 Date: 2026-06-26
 Title: Antimicrobial Resistance Data Analysis
 Description: Functions to simplify and standardise antimicrobial resistance (AMR)
diff --git a/NEWS.md b/NEWS.md
index 29a4837c9..6af730c21 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,4 +1,4 @@
-# AMR 3.0.1.9072
+# AMR 3.0.1.9073
 
 Planned as v3.1.0, end of June 2026.
 
diff --git a/data-raw/_generate_python_wrapper.sh b/data-raw/_generate_python_wrapper.sh
index 8b85c0c5b..eb8751ada 100644
--- a/data-raw/_generate_python_wrapper.sh
+++ b/data-raw/_generate_python_wrapper.sh
@@ -72,8 +72,16 @@ base._libPaths(r_lib_path)
 # Check if the AMR package is installed in R
 if not isinstalled('AMR', lib_loc=r_lib_path):
     print(f"AMR: Installing latest AMR R package to {r_lib_path}...", flush=True)
-    utils.install_packages('remotes', repos='https://cloud.r-project.org', lib=r_lib_path, quiet=True)
+    utils.install_packages(
+        'remotes',
+        repos='https://cloud.r-project.org',
+        lib=r_lib_path,
+        dependencies=True,
+        quiet=True
+    )
+    rint(f"AMR: Installed 'remotes'", flush=True)
     remotes = importr('remotes', lib_loc=r_lib_path)
+    rint(f"AMR: Loaded 'remotes'", flush=True)
     remotes.install_github('msberends/AMR', lib=r_lib_path, quiet=True)
 
 # Retrieve Python AMR version
@@ -90,7 +98,13 @@ r_amr_version = str(r_amr_version[0])
 if r_amr_version != python_amr_version:
     try:
         print(f"AMR: Updating AMR package in {r_lib_path}...", flush=True)
-        utils.install_packages('remotes', repos='https://cloud.r-project.org', lib=r_lib_path, quiet=True)
+        utils.install_packages(
+            'remotes',
+            repos='https://cloud.r-project.org',
+            lib=r_lib_path,
+            dependencies=True,
+            quiet=True
+        )
         remotes = importr('remotes', lib_loc=r_lib_path)
         remotes.install_github('msberends/AMR', lib=r_lib_path, quiet=True)
         r_amr_version = robjects.r(f'as.character(packageVersion("AMR", lib.loc = "{r_lib_path}"))')