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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9018</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9019</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,43 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 1 0.001 0.25 1 16 0.0625 64 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.01 0.125 8 128 0.0625 >=256 0.025 >=256 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 64 32 0.0625 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 2 0.002 128 2 2 0.005 0.005 256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 0.025 128 256 0.5 1 256 <=0.001 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.002 0.0625 8 2 128 32 0.5 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 46 30 46 39 44 18 22 8 28 24 30 14 20 47 46 10 41 46 21 23 47 13 25 49</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 50 44 50 41 22 8 38 35 50 20 13 9 6 17 45 34 12 45 39 44 39 15 35 12</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R R I S S S S S R R R I R S S S I R S I R S I I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R S I R I S I S I I S R S S I R S S I I S S I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 64 0.005 32 4 0.005 128 0.25 64 0.025 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.025 0.025 2 0.125 64 8 2 1 0.125 64 32 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 32 <=0.001 1 0.125 0.0625 0.002 0.002 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 64 32 0.5 0.5 2 4 32 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 0.025 0.002 32 >=128 0.005 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 4 8 8 2 8 1 0.5 16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 16 <=0.25 0.5 8 8 1 2 2 <=0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 8 2 2 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 1 16 32 <=0.25 <=0.25 0.5 16 2 <=0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 <=0.25 32 4 1 <=0.25 32 4 16 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 1 8 1 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 8 0.125 8 16 4 8 0.025 8 4 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.125 0.125 0.25 1 0.025 8 0.025 1 2 4 4 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 8 1 0.125 8 4 0.5 0.125 >=16 0.025 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 >=16 0.5 0.025 1 8 4 0.125 8 1 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=16 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 35 48 23 48 32 44 49 43 11 18 41 37 30 22 19 26 40 50 15 30 41 41 42 21 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 45 38 25 41 41 36 22 23 44 50 50 10 33 43 40 23 46 19 23 39 14 8 43 27</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 16 13 12 16 11 12 16 17 15 14 13 12 13 15 16 15 13 16 14 16 16 17 16 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 13 13 12 17 13 17 11 13 17 14 11 14 15 11 16 13 17 11 16 11 12 14 15 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 18 18 18 24 15 20 19 20 21 26 22 18 15 23 21 19 22 26 25 21 23 20 16 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 17 20 25 19 17 25 18 23 20 17 17 19 26 19 21 26 16 20 18 16 15 18 15 18</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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