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styled, unit test fix

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dr. M.S. (Matthijs) Berends
2022-08-28 10:31:50 +02:00
parent 4cb1db4554
commit 4d050aef7c
147 changed files with 10897 additions and 8169 deletions
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59
data-raw/_language_update.R
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@ -9,7 +9,7 @@
# (c) 2018-2022 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
@ -28,9 +28,10 @@
if (!file.exists("DESCRIPTION") || !"Package: AMR" %in% readLines("DESCRIPTION")) {
stop("Be sure to run this script in the root location of the AMR package folder.\n",
"Working directory expected to contain the DESCRIPTION file of the AMR package.\n",
"Current working directory: ", getwd(),
call. = FALSE)
"Working directory expected to contain the DESCRIPTION file of the AMR package.\n",
"Current working directory: ", getwd(),
call. = FALSE
)
}
# save old global env to restore later
@ -41,34 +42,42 @@ load("R/sysdata.rda", envir = lang_env)
# replace language objects with updates
message("Reading translation file...")
lang_env$TRANSLATIONS <- utils::read.delim(file = "data-raw/translations.tsv",
sep = "\t",
stringsAsFactors = FALSE,
header = TRUE,
blank.lines.skip = TRUE,
fill = TRUE,
strip.white = TRUE,
encoding = "UTF-8",
fileEncoding = "UTF-8",
na.strings = c(NA, "", NULL),
allowEscapes = TRUE, # else "\\1" will be imported as "\\\\1"
quote = "")
lang_env$TRANSLATIONS <- utils::read.delim(
file = "data-raw/translations.tsv",
sep = "\t",
stringsAsFactors = FALSE,
header = TRUE,
blank.lines.skip = TRUE,
fill = TRUE,
strip.white = TRUE,
encoding = "UTF-8",
fileEncoding = "UTF-8",
na.strings = c(NA, "", NULL),
allowEscapes = TRUE, # else "\\1" will be imported as "\\\\1"
quote = ""
)
lang_env$LANGUAGES_SUPPORTED_NAMES <- c(list(en = list(exonym = "English", endonym = "English")),
lapply(lang_env$TRANSLATIONS[, which(nchar(colnames(lang_env$TRANSLATIONS)) == 2), drop = FALSE],
function(x) list(exonym = x[1], endonym = x[2])))
lang_env$LANGUAGES_SUPPORTED_NAMES <- c(
list(en = list(exonym = "English", endonym = "English")),
lapply(
lang_env$TRANSLATIONS[, which(nchar(colnames(lang_env$TRANSLATIONS)) == 2), drop = FALSE],
function(x) list(exonym = x[1], endonym = x[2])
)
)
lang_env$LANGUAGES_SUPPORTED <- names(lang_env$LANGUAGES_SUPPORTED_NAMES)
# save env to internal package data
# usethis::use_data() does not allow to save a list :(
message("Saving to internal data...")
save(list = names(lang_env),
file = "R/sysdata.rda",
ascii = FALSE,
version = 2,
compress = "xz",
envir = lang_env)
save(
list = names(lang_env),
file = "R/sysdata.rda",
ascii = FALSE,
version = 2,
compress = "xz",
envir = lang_env
)
rm(lang_env)