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mirror of https://github.com/msberends/AMR.git synced 2025-07-13 05:21:50 +02:00

styled, unit test fix

This commit is contained in:
2022-08-28 10:31:50 +02:00
parent 4cb1db4554
commit 4d050aef7c
147 changed files with 10897 additions and 8169 deletions

View File

@ -9,7 +9,7 @@
# (c) 2018-2022 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
@ -23,17 +23,21 @@
# how to conduct AMR data analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
expect_equal(as.character(as.ab(c("J01FA01",
"J 01 FA 01",
"Erythromycin",
"eryt",
" eryt 123",
"ERYT",
"ERY",
"erytromicine",
"Erythrocin",
"Romycin"))),
rep("ERY", 10))
expect_equal(
as.character(as.ab(c(
"J01FA01",
"J 01 FA 01",
"Erythromycin",
"eryt",
" eryt 123",
"ERYT",
"ERY",
"erytromicine",
"Erythrocin",
"Romycin"
))),
rep("ERY", 10)
)
expect_identical(class(as.ab("amox")), c("ab", "character"))
expect_identical(class(antibiotics$ab), c("ab", "character"))
@ -47,17 +51,25 @@ expect_warning(as.ab(""))
expect_stdout(print(as.ab("amox")))
expect_equal(as.character(as.ab("Phloxapen")),
"FLC")
expect_equal(
as.character(as.ab("Phloxapen")),
"FLC"
)
expect_equal(suppressWarnings(as.character(as.ab(c("Bacteria", "Bacterial")))),
c(NA, "TMP"))
expect_equal(
suppressWarnings(as.character(as.ab(c("Bacteria", "Bacterial")))),
c(NA, "TMP")
)
expect_equal(as.character(as.ab("Amoxy + clavulaanzuur")),
"AMC")
expect_equal(
as.character(as.ab("Amoxy + clavulaanzuur")),
"AMC"
)
expect_equal(as.character(as.ab(c("mreopenem", "co-maoxiclav"))),
c("MEM", "AMC"))
expect_equal(
as.character(as.ab(c("mreopenem", "co-maoxiclav"))),
c("MEM", "AMC")
)
expect_message(as.ab("cipro mero"))