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mirror of https://github.com/msberends/AMR.git synced 2025-07-12 21:41:55 +02:00

styled, unit test fix

This commit is contained in:
2022-08-28 10:31:50 +02:00
parent 4cb1db4554
commit 4d050aef7c
147 changed files with 10897 additions and 8169 deletions

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@ -9,7 +9,7 @@
# (c) 2018-2022 Berends MS, Luz CF et al. #
# Developed at the University of Groningen, the Netherlands, in #
# collaboration with non-profit organisations Certe Medical #
# Diagnostics & Advice, and University Medical Center Groningen. #
# Diagnostics & Advice, and University Medical Center Groningen. #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
@ -28,14 +28,16 @@
# example 1: clearfield rice vs. red rice
x <- c(772, 1611, 737)
expect_equal(g.test(x, p = c(0.25, 0.50, 0.25))$p.value,
0.12574,
tolerance = 0.0001)
0.12574,
tolerance = 0.0001
)
# example 2: red crossbills
x <- c(1752, 1895)
expect_equal(g.test(x)$p.value,
0.017873,
tolerance = 0.0001)
0.017873,
tolerance = 0.0001
)
expect_error(g.test(0))
expect_error(g.test(c(0, 1), 0))
@ -46,18 +48,22 @@ expect_warning(g.test(c(1, 2, 3, 4), p = c(0.25, 0.25, 0.25, 0.24), rescale.p =
# INDEPENDENCE
x <- as.data.frame(
matrix(data = round(runif(4) * 100000, 0),
ncol = 2,
byrow = TRUE)
matrix(
data = round(runif(4) * 100000, 0),
ncol = 2,
byrow = TRUE
)
)
# fisher.test() is always better for 2x2 tables:
expect_warning(g.test(x))
expect_true(suppressWarnings(g.test(x)$p.value) < 1)
expect_warning(g.test(x = c(772, 1611, 737),
y = c(780, 1560, 780),
rescale.p = TRUE))
expect_warning(g.test(
x = c(772, 1611, 737),
y = c(780, 1560, 780),
rescale.p = TRUE
))
expect_error(g.test(matrix(data = c(-1, -2, -3, -4), ncol = 2, byrow = TRUE)))
expect_error(g.test(matrix(data = c(0, 0, 0, 0), ncol = 2, byrow = TRUE)))