P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 11:42:00 +02:00
Code Releases Activity

styled, unit test fix

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-08-28 10:31:50 +02:00
parent 4cb1db4554
commit 4d050aef7c
147 changed files with 10897 additions and 8169 deletions
Download Patch File Download Diff File Expand all files Collapse all files

18
man/guess_ab_col.Rd
View File

@ -30,8 +30,10 @@ This tries to find a column name in a data set based on information from the \li
You can look for an antibiotic (trade) name or abbreviation and it will search \code{x} and the \link{antibiotics} data set for any column containing a name or code of that antibiotic. \strong{Longer columns names take precedence over shorter column names.}
}
\examples{
df <- data.frame(amox = "S",
tetr = "R")
df <- data.frame(
amox = "S",
tetr = "R"
)
guess_ab_col(df, "amoxicillin")
# [1] "amox"
@ -43,8 +45,10 @@ guess_ab_col(df, "J01AA07", verbose = TRUE)
# [1] "tetr"
# WHONET codes
df <- data.frame(AMP_ND10 = "R",
AMC_ED20 = "S")
df <- data.frame(
AMP_ND10 = "R",
AMC_ED20 = "S"
)
guess_ab_col(df, "ampicillin")
# [1] "AMP_ND10"
guess_ab_col(df, "J01CR02")
@ -53,8 +57,10 @@ guess_ab_col(df, as.ab("augmentin"))
# [1] "AMC_ED20"
# Longer names take precendence:
df <- data.frame(AMP_ED2 = "S",
AMP_ED20 = "S")
df <- data.frame(
AMP_ED2 = "S",
AMP_ED20 = "S"
)
guess_ab_col(df, "ampicillin")
# [1] "AMP_ED20"
}