mirror of
https://github.com/msberends/AMR.git
synced 2025-07-12 11:01:52 +02:00
styled, unit test fix
This commit is contained in:
16
man/mdro.Rd
16
man/mdro.Rd
@ -137,7 +137,7 @@ You can print the rules set in the console for an overview. Colours will help re
|
||||
#> 1. CIP is "R" and age is higher than 60 -> Elderly Type A
|
||||
#> 2. ERY is "R" and age is higher than 60 -> Elderly Type B
|
||||
#> 3. Otherwise -> Negative
|
||||
#>
|
||||
#>
|
||||
#> Unmatched rows will return NA.
|
||||
}\if{html}{\out{</div>}}
|
||||
|
||||
@ -153,10 +153,10 @@ table(x)
|
||||
Rules can also be combined with other custom rules by using \code{\link[=c]{c()}}:
|
||||
|
||||
\if{html}{\out{<div class="sourceCode">}}\preformatted{x <- mdro(example_isolates,
|
||||
guideline = c(custom,
|
||||
guideline = c(custom,
|
||||
custom_mdro_guideline(ERY == "R" & age > 50 ~ "Elderly Type C")))
|
||||
table(x)
|
||||
#> Negative Elderly Type A Elderly Type B Elderly Type C
|
||||
#> Negative Elderly Type A Elderly Type B Elderly Type C
|
||||
#> 961 198 732 109
|
||||
}\if{html}{\out{</div>}}
|
||||
|
||||
@ -193,8 +193,11 @@ str(out)
|
||||
table(out)
|
||||
|
||||
out <- mdro(example_isolates,
|
||||
guideline = custom_mdro_guideline(AMX == "R" ~ "Custom MDRO 1",
|
||||
VAN == "R" ~ "Custom MDRO 2"))
|
||||
guideline = custom_mdro_guideline(
|
||||
AMX == "R" ~ "Custom MDRO 1",
|
||||
VAN == "R" ~ "Custom MDRO 2"
|
||||
)
|
||||
)
|
||||
table(out)
|
||||
|
||||
\donttest{
|
||||
@ -202,13 +205,12 @@ if (require("dplyr")) {
|
||||
example_isolates \%>\%
|
||||
mdro() \%>\%
|
||||
table()
|
||||
|
||||
|
||||
# no need to define `x` when used inside dplyr verbs:
|
||||
example_isolates \%>\%
|
||||
mutate(MDRO = mdro()) \%>\%
|
||||
pull(MDRO) \%>\%
|
||||
table()
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
|
Reference in New Issue
Block a user