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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9058</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9059</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,44 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.25 0.01 8 128 0.025 0.5 <=0.002 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 16 0.005 0.005 0.025 0.025 0.25 0.025 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 256 256 2 256 0.005 0.025 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.0625 0.025 0.25 0.025 0.01 0.005 128 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 64 32 0.125 0.002 0.005 64 0.0625 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 128 0.0625 <=0.001 0.002 0.0625 0.25 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 16 47 35 37 49 26 34 44 48 27 44 26 41 49 23 7 50 19 34 38 25 21 43 29</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 47 11 44 36 21 24 31 13 40 21 42 33 36 18 41 40 15 19 26 48 8 11 37 46</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S S S I S S R R R I S S S S S S S S R I R I S</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S R R I S R I R I R R R I R I R S R R R I S S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 128 0.001 0.01 128 0.01 0.001 0.01 4 128 0.001 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.002 4 16 32 1 0.25 1 2 64 16 64 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.5 0.01 16 8 0.0625 <=0.001 0.0625 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 4 8 <=0.001 0.002 4 <=0.001 0.0625 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.01 0.01 <=0.001 0.002 0.025 2 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 8 8 8 <=1 2 4 8 >=16 >=16 2 4 8 >=16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 4 2 >=16 4 <=1 2 >=16 8 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 16 16 8 16 1 8 8 4 16 4 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 1 <=0.5 4 <=0.5 16 1 2 8 16 <=0.5 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 >=16 >=16 4 2 0.5 0.5 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 0.5 <=0.125 2 4 >=16 4 8 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 1 <=0.125 0.5 0.5 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 4 0.25 <=0.0625 16 <=0.0625 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.5 0.125 8 1 0.25 0.5 8 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] <=0.0625 0.125 0.25 0.25 0.5 16 0.125 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] <=0.0625</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 36 49 10 16 15 34 46 43 42 33 47 43 50 19 45 45 13 34 9 46 20 42 40 12</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 26 37 31 35 32 48 43 11 17 25 20 47 27 30 44 48 41 47 46 45 37 41 13 28</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 11 16 13 11 12 11 14 13 11 14 11 12 15 12 12 13 13 17 17 16 13 16 11 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 16 14 12 17 11 14 11 12 11 16 12 16 11 16 12 14 17 12 13 14 15 17 15 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 15 25 23 16 23 16 27 26 20 17 16 22 22 27 18 24 17 26 25 27 21 16 27 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 22 20 23 18 16 19 27 17 16 24 16 27 16 17 17 15 19 15 15 20 22 24 21 20</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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