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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup

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dr. M.S. (Matthijs) Berends
2020-09-29 23:35:46 +02:00
parent 68e6e1e329
commit 4e0374af29
94 changed files with 1143 additions and 1165 deletions
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7
R/disk.R
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@ -33,7 +33,7 @@
#' @seealso [as.rsi()]
#' @inheritSection AMR Read more on our website!
#' @examples
#' \dontrun{
#' \donttest{
#' # transform existing disk zones to the `disk` class
#' library(dplyr)
#' df <- data.frame(microorganism = "E. coli",
@ -41,8 +41,9 @@
#' CIP = 14,
#' GEN = 18,
#' TOB = 16)
#' df <- df %>% mutate_at(vars(AMP:TOB), as.disk)
#' df
#' df[, 2:5] <- lapply(df[, 2:5], as.disk)
#' # same with dplyr:
#' # df %>% mutate(across(AMP:TOB, as.disk))
#'
#' # interpret disk values, see ?as.rsi
#' as.rsi(x = as.disk(18),