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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup

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dr. M.S. (Matthijs) Berends
2020-09-29 23:35:46 +02:00
parent 68e6e1e329
commit 4e0374af29
94 changed files with 1143 additions and 1165 deletions
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29
man/join.Rd
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@ -57,18 +57,21 @@ On our website \url{https://msberends.github.io/AMR} you can find \href{https://
left_join_microorganisms(as.mo("K. pneumoniae"))
left_join_microorganisms("B_KLBSL_PNE")
\dontrun{
library(dplyr)
example_isolates \%>\% left_join_microorganisms()
df <- data.frame(date = seq(from = as.Date("2018-01-01"),
to = as.Date("2018-01-07"),
by = 1),
bacteria = as.mo(c("S. aureus", "MRSA", "MSSA", "STAAUR",
"E. coli", "E. coli", "E. coli")),
stringsAsFactors = FALSE)
colnames(df)
df_joined <- left_join_microorganisms(df, "bacteria")
colnames(df_joined)
\donttest{
if (require("dplyr")) {
example_isolates \%>\%
left_join_microorganisms() \%>\%
colnames()
df <- data.frame(date = seq(from = as.Date("2018-01-01"),
to = as.Date("2018-01-07"),
by = 1),
bacteria = as.mo(c("S. aureus", "MRSA", "MSSA", "STAAUR",
"E. coli", "E. coli", "E. coli")),
stringsAsFactors = FALSE)
colnames(df)
df_joined <- left_join_microorganisms(df, "bacteria")
colnames(df_joined)
}
}
}