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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup

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dr. M.S. (Matthijs) Berends
2020-09-29 23:35:46 +02:00
parent 68e6e1e329
commit 4e0374af29
94 changed files with 1143 additions and 1165 deletions
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9
man/proportion.Rd
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@ -218,15 +218,6 @@ if (require("dplyr")) {
group_by(hospital_id) \%>\%
proportion_df(translate = FALSE)
}
\dontrun{
# calculate current empiric combination therapy of Helicobacter gastritis:
my_table \%>\%
filter(first_isolate == TRUE,
genus == "Helicobacter") \%>\%
summarise(p = susceptibility(AMX, MTR), # amoxicillin with metronidazole
n = count_all(AMX, MTR))
}
}
\seealso{
\code{\link[=count]{count()}} to count resistant and susceptible isolates.