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(v0.9.0.9019) website update

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dr. M.S. (Matthijs) Berends
2020-02-01 15:09:36 +01:00
parent f152ab9a48
commit 4e1c16c5a5
24 changed files with 70132 additions and 101 deletions
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8
man/antibiotics.Rd
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@ -56,6 +56,14 @@ Two data sets containing all antibiotics/antimycotics and antivirals. Use \code{
Properties that are based on an ATC code are only available when an ATC is available. These properties are: \code{atc_group1}, \code{atc_group2}, \code{oral_ddd}, \code{oral_units}, \code{iv_ddd} and \code{iv_units}.
Synonyms (i.e. trade names) are derived from the Compound ID (\code{cid}) and consequently only available where a CID is available.
\subsection{Direct download}{
These data sets are available as 'flat files' for use even without R - you can find the files here:
\itemize{
\item \url{https://gitlab.com/msberends/AMR/blob/master/data-raw/antibiotics.R}
\item \url{https://gitlab.com/msberends/AMR/blob/master/data-raw/antivirals.R}
}
}
}
\section{WHOCC}{

7
man/microorganisms.Rd
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@ -39,6 +39,13 @@ Manually added were:
\item 6 families under the Enterobacterales order, according to Adeolu \emph{et al.} (2016, PMID 27620848), that are not in the Catalogue of Life
\item 12,600 species from the DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) since the DSMZ contain the latest taxonomic information based on recent publications
}
\subsection{Direct download}{
This data set is available as 'flat file' for use even without R - you can find the file here:
\itemize{
\item \url{https://gitlab.com/msberends/AMR/blob/master/data-raw/microorganisms.R}
}
}
}
\section{About the records from DSMZ (see source)}{