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(v1.7.1.9022) rely on vctrs for ab selectors
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11
R/mdro.R
11
R/mdro.R
@ -187,13 +187,9 @@ mdro <- function(x = NULL,
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check_dataset_integrity()
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info.bak <- info
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if (message_not_thrown_before("mdro")) {
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remember_thrown_message("mdro")
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} else {
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# don't thrown info's more than once per call
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info <- FALSE
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}
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# don't thrown info's more than once per call
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info <- message_not_thrown_before("mdro")
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if (interactive() & verbose == TRUE & info == TRUE) {
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txt <- paste0("WARNING: In Verbose mode, the mdro() function does not return the MDRO results, but instead returns a data set in logbook form with extensive info about which isolates would be MDRO-positive, or why they are not.",
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"\n\nThis may overwrite your existing data if you use e.g.:",
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@ -1416,7 +1412,6 @@ mdro <- function(x = NULL,
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if (message_not_thrown_before("mdro.availability")) {
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warning_("NA introduced for isolates where the available percentage of antimicrobial classes was below ",
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percentage(pct_required_classes), " (set with `pct_required_classes`)", call = FALSE)
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remember_thrown_message("mdro.availability")
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}
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# set these -1s to NA
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x[which(x$MDRO == -1), "MDRO"] <- NA_integer_
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