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(v1.7.1.9022) rely on vctrs for ab selectors

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dr. M.S. (Matthijs) Berends
2021-07-23 21:42:11 +02:00
parent 0ec81cc12e
commit 4e1efd902c
130 changed files with 3785 additions and 2960 deletions
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17
R/zzz.R
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@ -56,15 +56,29 @@ if (utf8_supported && !is_latex) {
# Support for frequency tables from the cleaner package
s3_register("cleaner::freq", "mo")
s3_register("cleaner::freq", "rsi")
# Support from skim() from the skimr package
# Support for skim() from the skimr package
s3_register("skimr::get_skimmers", "mo")
s3_register("skimr::get_skimmers", "rsi")
s3_register("skimr::get_skimmers", "mic")
s3_register("skimr::get_skimmers", "disk")
# Support for autoplot() from the ggplot2 package
s3_register("ggplot2::autoplot", "rsi")
s3_register("ggplot2::autoplot", "mic")
s3_register("ggplot2::autoplot", "disk")
s3_register("ggplot2::autoplot", "resistance_predict")
# Support vctrs package for use in e.g. dplyr verbs
s3_register("vctrs::vec_ptype2", "ab.character")
s3_register("vctrs::vec_ptype2", "character.ab")
s3_register("vctrs::vec_cast", "character.ab")
s3_register("vctrs::vec_ptype2", "mo.character")
s3_register("vctrs::vec_ptype2", "character.mo")
s3_register("vctrs::vec_cast", "character.mo")
s3_register("vctrs::vec_ptype2", "ab_selector.character")
s3_register("vctrs::vec_ptype2", "character.ab_selector")
s3_register("vctrs::vec_cast", "character.ab_selector")
s3_register("vctrs::vec_ptype2", "disk.integer")
s3_register("vctrs::vec_ptype2", "integer.disk")
s3_register("vctrs::vec_cast", "integer.disk")
# if mo source exists, fire it up (see mo_source())
try({
@ -75,6 +89,7 @@ if (utf8_supported && !is_latex) {
# reference data - they have additional columns compared to `antibiotics` and `microorganisms` to improve speed
# they can't be part of R/sysdata.rda since CRAN thinks it would make the package too large (+3 MB)
assign(x = "AB_lookup", value = create_AB_lookup(), envir = asNamespace("AMR"))
assign(x = "MO_lookup", value = create_MO_lookup(), envir = asNamespace("AMR"))
assign(x = "MO.old_lookup", value = create_MO.old_lookup(), envir = asNamespace("AMR"))