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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix

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dr. M.S. (Matthijs) Berends
2020-09-18 16:05:53 +02:00
parent 89401ede9f
commit 4e40e42011
138 changed files with 2923 additions and 1472 deletions
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9
docs/reference/intrinsic_resistant.html
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@ -50,7 +50,7 @@
<meta property="og:title" content="Data set with bacterial intrinsic resistance — intrinsic_resistant" />
<meta property="og:description" content="Data set containing defined intrinsic resistance by EUCAST of all bug-drug combinations." />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.svg" />
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
@ -82,7 +82,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9015</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.3.0.9022</span>
</span>
</div>
@ -247,7 +247,7 @@
<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
<p>A <code><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></code> with 49,462 observations and 2 variables:</p><ul>
<p>A <a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a> with 49,462 observations and 2 variables:</p><ul>
<li><p><code>microorganism</code><br /> Name of the microorganism</p></li>
<li><p><code>antibiotic</code><br /> Name of the antibiotic drug</p></li>
</ul>
@ -273,7 +273,8 @@
<span class='fu'><a href='https://dplyr.tidyverse.org/reference/filter.html'>filter</a></span>(<span class='kw'>antibiotic</span> <span class='op'>==</span> <span class='st'>"Vancomycin"</span>, <span class='kw'>microorganism</span> <span class='op'>%like%</span> <span class='st'>"Enterococcus"</span>) <span class='op'>%&gt;%</span>
<span class='fu'><a href='https://dplyr.tidyverse.org/reference/pull.html'>pull</a></span>(<span class='kw'>microorganism</span>)
<span class='co'># [1] "Enterococcus casseliflavus" "Enterococcus gallinarum"</span>
}</pre>
}
</pre>
</div>
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