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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix

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dr. M.S. (Matthijs) Berends
2020-09-18 16:05:53 +02:00
parent 89401ede9f
commit 4e40e42011
138 changed files with 2923 additions and 1472 deletions
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6
man/as.mic.Rd
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@ -4,7 +4,7 @@
\alias{as.mic}
\alias{mic}
\alias{is.mic}
\title{Transform input to minimum inhibitory concentrations}
\title{Transform input to minimum inhibitory concentrations (MIC)}
\usage{
as.mic(x, na.rm = FALSE)
@ -16,10 +16,10 @@ is.mic(x)
\item{na.rm}{a logical indicating whether missing values should be removed}
}
\value{
Ordered \code{\link{factor}} with new class \code{\link{mic}}
Ordered \link{factor} with additional class \code{\link{mic}}
}
\description{
This transforms a vector to a new class \code{\link{mic}}, which is an ordered \code{\link{factor}} with valid minimum inhibitory concentrations (MIC) as levels. Invalid MIC values will be translated as \code{NA} with a warning.
This transforms a vector to a new class \code{\link{mic}}, which is an ordered \link{factor} with valid minimum inhibitory concentrations (MIC) as levels. Invalid MIC values will be translated as \code{NA} with a warning.
}
\details{
To interpret MIC values as RSI values, use \code{\link[=as.rsi]{as.rsi()}} on MIC values. It supports guidelines from EUCAST and CLSI.