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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix

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dr. M.S. (Matthijs) Berends
2020-09-18 16:05:53 +02:00
parent 89401ede9f
commit 4e40e42011
138 changed files with 2923 additions and 1472 deletions
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4
man/resistance_predict.Rd
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@ -47,7 +47,7 @@ ggplot_rsi_predict(
)
}
\arguments{
\item{x}{a \code{\link{data.frame}} containing isolates.}
\item{x}{a \link{data.frame} containing isolates.}
\item{col_ab}{column name of \code{x} containing antimicrobial interpretations (\code{"R"}, \code{"I"} and \code{"S"})}
@ -76,7 +76,7 @@ ggplot_rsi_predict(
\item{ribbon}{a logical to indicate whether a ribbon should be shown (default) or error bars}
}
\value{
A \code{\link{data.frame}} with extra class \code{\link{resistance_predict}} with columns:
A \link{data.frame} with extra class \code{\link{resistance_predict}} with columns:
\itemize{
\item \code{year}
\item \code{value}, the same as \code{estimated} when \code{preserve_measurements = FALSE}, and a combination of \code{observed} and \code{estimated} otherwise