P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-10 06:21:50 +02:00
Code Releases Activity

(v1.5.0.9006) major documentation update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-01-18 16:57:56 +01:00
parent e95218c0d1
commit 4eab095306
174 changed files with 1488 additions and 1071 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
R/ab_from_text.R
View File

@ -23,10 +23,10 @@
# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
#' Retrieve antimicrobial drug names and doses from clinical text
#' Retrieve Antimicrobial Drug Names and Doses from Clinical Text
#'
#' Use this function on e.g. clinical texts from health care records. It returns a [list] with all antimicrobial drugs, doses and forms of administration found in the texts.
#' @inheritSection lifecycle Maturing lifecycle
#' @inheritSection lifecycle Maturing Lifecycle
#' @param text text to analyse
#' @param type type of property to search for, either `"drug"`, `"dose"` or `"administration"`, see *Examples*
#' @param collapse character to pass on to `paste(..., collapse = ...)` to only return one character per element of `text`, see *Examples*
@ -52,7 +52,7 @@
#' `df %>% mutate(abx = ab_from_text(clinical_text, collapse = "|"))`
#' @export
#' @return A [list], or a [character] if `collapse` is not `NULL`
#' @inheritSection AMR Read more on our website!
#' @inheritSection AMR Read more on Our Website!
#' @examples
#' # mind the bad spelling of amoxicillin in this line,
#' # straight from a true health care record: