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(v1.5.0.9006) major documentation update

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dr. M.S. (Matthijs) Berends
2021-01-18 16:57:56 +01:00
parent e95218c0d1
commit 4eab095306
174 changed files with 1488 additions and 1071 deletions
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14
R/age.R
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@ -23,10 +23,10 @@
# how to conduct AMR analysis: https://msberends.github.io/AMR/ #
# ==================================================================== #
#' Age in years of individuals
#' Age in Years of Individuals
#'
#' Calculates age in years based on a reference date, which is the sytem date at default.
#' @inheritSection lifecycle Stable lifecycle
#' @inheritSection lifecycle Stable Lifecycle
#' @param x date(s), will be coerced with [as.POSIXlt()]
#' @param reference reference date(s) (defaults to today), will be coerced with [as.POSIXlt()]
#' @param exact a logical to indicate whether age calculation should be exact, i.e. with decimals. It divides the number of days of [year-to-date](https://en.wikipedia.org/wiki/Year-to-date) (YTD) of `x` by the number of days in the year of `reference` (either 365 or 366).
@ -35,7 +35,7 @@
#' @details Ages below 0 will be returned as `NA` with a warning. Ages above 120 will only give a warning.
#' @return An [integer] (no decimals) if `exact = FALSE`, a [double] (with decimals) otherwise
#' @seealso To split ages into groups, use the [age_groups()] function.
#' @inheritSection AMR Read more on our website!
#' @inheritSection AMR Read more on Our Website!
#' @export
#' @examples
#' # 10 random birth dates
@ -96,12 +96,12 @@ age <- function(x, reference = Sys.Date(), exact = FALSE, na.rm = FALSE, ...) {
ages
}
#' Split ages into age groups
#' Split Ages into Age Groups
#'
#' Split ages into age groups defined by the `split` argument. This allows for easier demographic (antimicrobial resistance) analysis.
#' @inheritSection lifecycle Stable lifecycle
#' @inheritSection lifecycle Stable Lifecycle
#' @param x age, e.g. calculated with [age()]
#' @param split_at values to split `x` at, defaults to age groups 0-11, 12-24, 25-54, 55-74 and 75+. See Details.
#' @param split_at values to split `x` at, defaults to age groups 0-11, 12-24, 25-54, 55-74 and 75+. See *Details*.
#' @param na.rm a [logical] to indicate whether missing values should be removed
#' @details To split ages, the input for the `split_at` argument can be:
#'
@ -115,7 +115,7 @@ age <- function(x, reference = Sys.Date(), exact = FALSE, na.rm = FALSE, ...) {
#' @return Ordered [factor]
#' @seealso To determine ages, based on one or more reference dates, use the [age()] function.
#' @export
#' @inheritSection AMR Read more on our website!
#' @inheritSection AMR Read more on Our Website!
#' @examples
#' ages <- c(3, 8, 16, 54, 31, 76, 101, 43, 21)
#'