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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9012</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9013</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,42 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 0.0625 0.002 >=256 4 16 4 >=256 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 8 4 0.0625 8 0.25 0.002 0.002 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 >=256 <=0.001 0.025 8 0.002 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 8 0.005 1 <=0.002 0.25 2 2 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 0.025 128 32 128 4 0.25 <=0.002 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 <=0.002 2 <=0.002 0.025 0.0625 256 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 40 43 40 50 12 30 46 29 23 39 31 20 33 50 33 41 13 47 40 40 10 29 50 41 47</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 30 36 49 27 28 21 45 21 47 48 20 6 47 11 47 33 26 11 48 36 23 46 8 47 33</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R R I R R R S R S S S I I I I S S R R I S S S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R S S S S S I S S R R S S S S I R I S I R R S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 8 0.001 1 64 0.005 128 64 0.025 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 128 0.25 0.025 16 0.025 32 32 2 0.0625 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.001 0.005 0.005 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 0.0625 4 8 4 0.5 64 0.002 64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.01 >=128 64 0.25 16 0.002 0.025 0.125 64 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 16 1 4 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 4 2 2 8 1 1 0.5 4 2 0.5 1 1 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] >=16 8 0.5 8 2 4 4 8 2 >=16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 16 >=32 2 16 8 >=32 8 4 >=32 2 8 2 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 8 2 1 4 16 >=32 >=32 16 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.0625 1 1 4 1 0.25 0.0625 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 0.5 1 <=0.025 4 0.5 0.0625 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] >=8 0.25 0.25 0.25 0.25 0.0625 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 <=0.125 >=8 2 1 1 4 <=0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 <=0.125 0.25 4 0.5 0.25 0.5 0.5 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.125 >=8 <=0.125 4 2 >=8 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 35 47 16 42 50 35 8 11 43 46 31 23 14 35 40 46 10 28 12 47 25 42 23 22 8</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 23 12 45 35 12 16 32 44 17 18 47 48 25 48 17 50 22 29 35 46 50 49 24 40</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 11 14 13 17 16 14 16 14 11 14 15 17 16 13 14 12 11 13 16 15 13 11 13 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 13 16 11 13 12 16 13 16 11 14 17 16 14 13 17 13 14 16 13 15 15 15 14 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 27 24 16 20 23 20 24 18 23 26 25 22 17 25 19 19 25 18 24 21 27 22 22 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 21 19 26 17 25 19 27 19 23 23 22 17 23 25 19 19 25 21 18 27 18 15 18 18</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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