@@ -243,21 +243,21 @@ make the structure of your data generally look like this:
@@ -1090,45 +1090,45 @@ antibiograms:
| Cardial |
-Gram-negative (490-490) |
-62 |
-56 |
+Gram-negative (506-506) |
+64 |
+55 |
62 |
| Respiratory |
-Gram-negative (494-494) |
+Gram-negative (538-538) |
65 |
58 |
+63 |
+
+
+| Rheumatic |
+Gram-negative (522-522) |
+62 |
+58 |
62 |
-
-| Rheumatic |
-Gram-negative (582-582) |
-64 |
-57 |
-63 |
-
| Cardial |
-Gram-positive (340-340) |
-64 |
-57 |
-65 |
+Gram-positive (344-344) |
+63 |
+59 |
+63 |
| Respiratory |
-Gram-positive (364-364) |
-66 |
-59 |
+Gram-positive (339-339) |
+63 |
+52 |
65 |
| Rheumatic |
-Gram-positive (356-356) |
-62 |
-53 |
-62 |
+Gram-positive (377-377) |
+66 |
+58 |
+64 |
@@ -1152,45 +1152,45 @@ antibiograms:
| Cardial |
-Gram-negative (490-490) |
-62 |
+Gram-negative (506-506) |
+64 |
76 |
-75 |
+74 |
| Respiratory |
-Gram-negative (494-494) |
+Gram-negative (538-538) |
65 |
+78 |
77 |
-75 |
| Rheumatic |
-Gram-negative (582-582) |
-64 |
-75 |
-75 |
+Gram-negative (522-522) |
+62 |
+74 |
+73 |
| Cardial |
-Gram-positive (340-340) |
-64 |
+Gram-positive (344-344) |
+63 |
75 |
75 |
| Respiratory |
-Gram-positive (364-364) |
-66 |
-80 |
+Gram-positive (339-339) |
+63 |
77 |
+74 |
| Rheumatic |
-Gram-positive (356-356) |
-62 |
+Gram-positive (377-377) |
+66 |
+79 |
77 |
-74 |
diff --git a/articles/AMR_files/figure-html/unnamed-chunk-13-1.png b/articles/AMR_files/figure-html/unnamed-chunk-13-1.png
index 317e8baa..44331332 100644
Binary files a/articles/AMR_files/figure-html/unnamed-chunk-13-1.png and b/articles/AMR_files/figure-html/unnamed-chunk-13-1.png differ
diff --git a/articles/EUCAST.html b/articles/EUCAST.html
index 6aef3cf7..55906050 100644
--- a/articles/EUCAST.html
+++ b/articles/EUCAST.html
@@ -38,7 +38,7 @@
AMR (for R)
- 2.0.0.9003
+ 2.0.0.9004
We can now add the interpretation of MDR-TB to our data set. You can
use:
@@ -438,32 +438,32 @@ Unique: 5
| 1 |
Mono-resistant |
-3239 |
-64.78% |
-3239 |
-64.78% |
+3251 |
+65.02% |
+3251 |
+65.02% |
| 2 |
Negative |
-1004 |
-20.08% |
-4243 |
-84.86% |
+971 |
+19.42% |
+4222 |
+84.44% |
| 3 |
Multi-drug-resistant |
-423 |
-8.46% |
-4666 |
-93.32% |
+468 |
+9.36% |
+4690 |
+93.80% |
| 4 |
Poly-resistant |
-250 |
-5.00% |
+226 |
+4.52% |
4916 |
98.32% |
diff --git a/articles/PCA.html b/articles/PCA.html
index cd1fe808..2e9186be 100644
--- a/articles/PCA.html
+++ b/articles/PCA.html
@@ -38,7 +38,7 @@
AMR (for R)
- 2.0.0.9003
+ 2.0.0.9004