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(v0.7.1.9006) new rsi calculations, atc class removal

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dr. M.S. (Matthijs) Berends
2019-07-02 16:48:52 +02:00
parent 156d550895
commit 4ff20af123
21 changed files with 48 additions and 43 deletions
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6
docs/reference/count.html
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@ -81,7 +81,7 @@ count_R and count_IR can be used to count resistant isolates, count_S and count_
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.7.1.9005</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.7.1.9006</span>
</span>
</div>
@ -349,10 +349,10 @@ not tested R - - - -
not tested not tested - - - -
-------------------------------------------------------------------------
</pre>
<p>Please note that for <code>only_all_tested = TRUE</code> applies that:</p><pre>
<p>Please note that, in combination therapies, for <code>only_all_tested = TRUE</code> applies that:</p><pre>
count_S() + count_I() + count_R() == count_all()
portion_S() + portion_I() + portion_R() == 1
</pre><p>and that for <code>only_all_tested = FALSE</code> applies that:</p><pre>
</pre><p>and that, in combination therapies, for <code>only_all_tested = FALSE</code> applies that:</p><pre>
count_S() + count_I() + count_R() &gt;= count_all()
portion_S() + portion_I() + portion_R() &gt;= 1
</pre>