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(v0.7.1.9006) new rsi calculations, atc class removal

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dr. M.S. (Matthijs) Berends
2019-07-02 16:48:52 +02:00
parent 156d550895
commit 4ff20af123
21 changed files with 48 additions and 43 deletions
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3
man/as.mo.Rd
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@ -145,6 +145,7 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
}
\examples{
\donttest{
# These examples all return "B_STPHY_AUR", the ID of S. aureus:
as.mo("sau") # WHONET code
as.mo("stau")
@ -179,7 +180,7 @@ as.mo("S. pyogenes", Lancefield = TRUE) # will not remain species: B_STRPT_GRA
# All mo_* functions use as.mo() internally too (see ?mo_property):
mo_genus("E. coli") # returns "Escherichia"
mo_gramstain("E. coli") # returns "Gram negative"#'
}
\dontrun{
df$mo <- as.mo(df$microorganism_name)