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Code Releases Activity

- Added new function guess_bactid to determine the ID of a microorganism based on genus/species

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- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-03-19 12:43:22 +01:00
parent 0fec64a240
commit 502a44eb25
23 changed files with 312 additions and 103 deletions
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man/septic_patients.Rd
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@@ -15,7 +15,7 @@
\item{\code{sex}}{sex of the patient}
\item{\code{patient_id}}{ID of the patient, first 10 characters of an SHA hash containing irretrievable information}
\item{\code{bactid}}{ID of microorganism, see \code{\link{bactlist}}}
\item{\code{peni:mupi}}{38 different antibiotics with class \code{rsi} (see \code{\link{as.rsi}}), these column names occur in \code{\link{ablist}} and can be translated with \code{\link{abname}}}
\item{\code{peni:mupi}}{38 different antibiotics with class \code{rsi} (see \code{\link{as.rsi}}), these column names occur in \code{\link{antibiotics}} and can be translated with \code{\link{abname}}}
}}
\source{
MOLIS (LIS of Certe) - \url{https://www.certe.nl}