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uncertainty levels, new WHONET codes

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-03-12 12:19:27 +01:00
parent b319b89750
commit 504a042fba
22 changed files with 402 additions and 292 deletions
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5
tests/testthat/test-mo.R
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@ -80,10 +80,11 @@ test_that("as.mo works", {
"staaur",
"S. aureus",
"S aureus",
"Sthafilokkockus aureeuzz",
"Staphylococcus aureus",
"MRSA",
"VISA"))),
rep("B_STPHY_AUR", 8))
rep("B_STPHY_AUR", 9))
expect_identical(
as.character(
as.mo(c('EHEC', 'EPEC', 'EIEC', 'STEC', 'ATEC'))),
@ -229,7 +230,7 @@ test_that("as.mo works", {
c("Microbacterium paraoxidans",
"Streptococcus suis (bovis gr)",
"Raoultella (here some text) terrigena")))),
c("B_MCRBC", "B_STRPT_SUI", "B_RLTLL_TER"))
c("B_MCRBC_PAR", "B_STRPT_SUI", "B_RLTLL_TER"))
print(mo_uncertainties())
# Salmonella (City) are all actually Salmonella enterica spp (City)