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@ -38,7 +38,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9045</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9046</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -314,19 +314,19 @@ Unique: 2</p>
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
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<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
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<span><span class="co"># 1 R R R I R R</span></span>
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<span><span class="co"># 2 R S R S R I</span></span>
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<span><span class="co"># 3 R I R R S S</span></span>
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<span><span class="co"># 4 S S I R R S</span></span>
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<span><span class="co"># 5 S S I I I R</span></span>
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<span><span class="co"># 6 S R S S I I</span></span>
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<span><span class="co"># 1 S R R I I I</span></span>
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<span><span class="co"># 2 R R I I R R</span></span>
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<span><span class="co"># 3 I R S I I S</span></span>
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<span><span class="co"># 4 I R S I I R</span></span>
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<span><span class="co"># 5 I I S R I I</span></span>
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<span><span class="co"># 6 S R S S R S</span></span>
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<span><span class="co"># kanamycin</span></span>
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<span><span class="co"># 1 R</span></span>
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<span><span class="co"># 1 I</span></span>
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<span><span class="co"># 2 S</span></span>
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<span><span class="co"># 3 S</span></span>
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<span><span class="co"># 4 I</span></span>
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<span><span class="co"># 5 I</span></span>
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<span><span class="co"># 6 I</span></span></code></pre></div>
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<span><span class="co"># 3 I</span></span>
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<span><span class="co"># 4 S</span></span>
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<span><span class="co"># 5 S</span></span>
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<span><span class="co"># 6 S</span></span></code></pre></div>
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<p>We can now add the interpretation of MDR-TB to our data set. You can use:</p>
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<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="../reference/mdro.html">mdro</a></span><span class="op">(</span><span class="va">my_TB_data</span>, guideline <span class="op">=</span> <span class="st">"TB"</span><span class="op">)</span></span></code></pre></div>
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@ -357,40 +357,40 @@ Unique: 5</p>
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<tr class="odd">
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<td align="left">1</td>
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<td align="left">Mono-resistant</td>
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<td align="right">3163</td>
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<td align="right">63.26%</td>
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<td align="right">3163</td>
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<td align="right">63.26%</td>
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<td align="right">3226</td>
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<td align="right">64.52%</td>
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<td align="right">3226</td>
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<td align="right">64.52%</td>
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</tr>
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<tr class="even">
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<td align="left">2</td>
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<td align="left">Negative</td>
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<td align="right">1043</td>
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<td align="right">20.86%</td>
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<td align="right">4206</td>
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<td align="right">84.12%</td>
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<td align="right">988</td>
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<td align="right">19.76%</td>
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<td align="right">4214</td>
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<td align="right">84.28%</td>
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</tr>
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<tr class="odd">
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<td align="left">3</td>
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<td align="left">Multi-drug-resistant</td>
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<td align="right">442</td>
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<td align="right">8.84%</td>
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<td align="right">4648</td>
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<td align="right">92.96%</td>
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<td align="right">440</td>
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<td align="right">8.80%</td>
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<td align="right">4654</td>
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<td align="right">93.08%</td>
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</tr>
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<tr class="even">
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<td align="left">4</td>
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<td align="left">Poly-resistant</td>
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<td align="right">245</td>
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<td align="right">4.90%</td>
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<td align="right">4893</td>
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<td align="right">97.86%</td>
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<td align="right">238</td>
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<td align="right">4.76%</td>
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<td align="right">4892</td>
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<td align="right">97.84%</td>
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</tr>
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<tr class="odd">
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<td align="left">5</td>
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<td align="left">Extensively drug-resistant</td>
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<td align="right">107</td>
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<td align="right">2.14%</td>
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<td align="right">108</td>
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<td align="right">2.16%</td>
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<td align="right">5000</td>
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<td align="right">100.00%</td>
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</tr>
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@ -410,7 +410,7 @@ Unique: 5</p>
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<div class="pkgdown-footer-right">
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<p></p>
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<p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.png" style="max-width: 200px;"></a></p>
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<p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.svg" style="max-width: 200px;"></a></p>
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</div>
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</footer>
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