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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9045</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.1.9046</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -178,41 +178,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.002 0.025 128 1 0.002 0.0625 0.25 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 2 0.5 0.0625 128 128 >=256 32 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 0.002 32 8 8 8 <=0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 16 >=256 2 0.5 0.01 0.5 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] <=0.001 1 <=0.001 >=256 2 0.5 >=256 0.002 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 <=0.001 0.01 64 128 16 0.125 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 35 28 42 31 7 47 45 37 17 44 17 26 25 47 40 22 10 32 36 50 50 24 46 40 10</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 44 7 48 45 20 42 10 37 32 44 27 23 36 11 29 11 21 32 38 19 34 18 10 14</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <rsi></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I S R I R R S S S S I S I I R I I I S I I I I R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S R S R I I S I S I R S R I S I R R I S I S I R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.0625 0.25 0.001 8 0.0625 32 8 0.001 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 32 >=64 >=64 8 32 0.0625 0.125 0.5 0.25 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 1 0.5 16 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.001 0.002 1 0.5 >=128 0.01 0.002 0.5 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 64 0.001 0.0625 0.125 1 0.0625 0.001 0.5 0.5 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 8 32 4 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 64 1 8 16 16 16 8 64 16 32 1 64 8 16 2 2 32 32 32 4 32 1 8 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 0.25 4 4 8 8 >=16 0.5 2 0.25 2 1 >=16 2 0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 0.25 0.5 1 0.5 0.25 0.25 2 1 1 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <mic></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 1 4 2 1 0.0625 0.025 0.025 0.125 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.025 0.25 0.25 0.025 0.25 1 2 0.25 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 1 1 0.025 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.0625 4 1 16 8 4 1 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 2 1 2 1 4 0.5 1 2 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 1 0.0625 16 0.125 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 24 37 27 23 31 14 9 18 27 42 22 44 41 22 24 22 42 25 49 27 30 30 8 46</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 20 12 27 44 48 50 12 30 17 17 41 35 27 46 44 39 9 46 40 14 47 32 23 27</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 13 14 12 12 13 14 12 16 13 14 15 11 16 17 12 12 17 11 13 15 11 13 17 16</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 12 16 16 16 12 12 16 12 14 14 11 17 13 13 17 12 16 15 15 13 11 14 16 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class <disk></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 26 22 26 25 20 24 22 26 20 19 20 27 19 15 15 17 15 22 27 18 15 27 16 25</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 15 25 24 25 27 22 23 18 24 17 18 19 25 25 15 23 15 25 19 25 26 23 26 23</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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</div>
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<div class="pkgdown-footer-right">
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<p></p><p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.png" style="max-width: 200px;"></a></p>
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<p></p><p><a target="_blank" href="https://www.rug.nl" class="external-link"><img src="https://github.com/msberends/AMR/raw/main/pkgdown/logos/logo_rug.svg" style="max-width: 200px;"></a></p>
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</div>
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</footer></div>
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