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(v2.1.1.9086) website update

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dr. M.S. (Matthijs) Berends
2024-10-02 10:20:05 +02:00
parent 88740b6f11
commit 50a9f8f0e0
41 changed files with 5664 additions and 635 deletions
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@ -169,6 +169,7 @@ pre_commit_lst$MO_WHO_PRIORITY_GENERA <- c(
"Coccidioides",
"Cryptococcus",
"Enterococcus",
"Escherichia",
"Fusarium",
"Haemophilus",
"Helicobacter",

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@ -23741,19 +23741,19 @@
"B_ECRBM_RMSM" "Erythromicrobium ramosum" "synonym" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Erythrobacteraceae" "Erythromicrobium" "ramosum" "" "species" "Yurkov et al., 1994" "LPSN" "776049" "515600" "12988" "3221406" 2 "434593006"
"B_ERMNS" "Erythromonas" "synonym" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Erythromonas" "" "" "genus" "Yurkov et al., 1997" "LPSN" "515601" "1302" "515246" "8926" 2 ""
"B_ERMNS_URSN" "Erythromonas ursincola" "synonym" "Bacteria" "Pseudomonadota" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Erythromonas" "ursincola" "" "species" "Yurkov et al., 1997" "LPSN" "776051" "515601" "774092" 2 ""
"B_ESCHR" "Escherichia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "" "" "genus" "Castellani et al., 1919" "facultative anaerobe" "LPSN" "515602" "482" "11158430" 1.15 "407310004,407251000,407281008,407284000,407283006,407160000,407285004,407159005,407287007,407290001,407291002,407289005,407293004,407222004,407295006,407294005,407297003,407260008,407299000,407300008,407301007,103429008,124994003,407303005,407306002,407305003,407308001,407253002,407254008,407262000,407263005,407265003,407264004,407267006,407269009,407256005,407271009,407199008,407273007,407275000,407258006,407278003,407279006,407277008,407231004,407235008,407234007,407233001,407237000,407239002,407241001,407243003,407245005,407246006,407227005,407229008,715877003,407203008,407161001,407204002,407158002,407207009,407206000,407209007,407211003,407214006,407213000,407219001,407217004,407218009,407216008,407220007,407221006,407224003,407225002,414103002,407197005,407198000,407196001,407202003,407201005,407182007,407184008,407163003,407186005,407190007,407189003,407188006,407192004,407194003,407165005,407169004,407168007,407173001,407172006,407171004,407175008,406629008,406628000,407177000,407179002,407180004,407156003,407157007,116398008,417207000,64735005,713416009"
"B_ESCHR_ADCR" "Escherichia adecarboxylata" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "adecarboxylata" "" "species" "Leclerc, 1962" "likely facultative anaerobe" "LPSN" "776052" "515602" "777447" 1.15 ""
"B_ESCHR_ALBR" "Escherichia albertii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "albertii" "" "species" "Huys et al., 2003" "facultative anaerobe" "LPSN" "776053" "515602" "5427575" 1.15 "419388003"
"B_ESCHR_BLTT" "Escherichia blattae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "blattae" "" "species" "Burgess et al., 1973" "likely facultative anaerobe" "LPSN" "776056" "515602" "788468" 1.5 ""
"B_ESCHR_COLI" "Escherichia coli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "" "species" "Castellani et al., 1919" "facultative anaerobe" "LPSN" "776057" "515602" "11286021" 1.15 "1095001000112106,715307006,737528008,416989002,116397003,414097009,414098004,414099007,414100004,116395006,735270003,116396007,83285000,116394005,112283007,710886005,710887001,710888006,710889003,414132004,721892009,416812001,416740004,417216001,457541006,710253004,416530004,417189006,409800005,713925008,444771000124108,838549008"
"B_ESCHR_COLI_COLI" "Escherichia coli coli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "coli" "subspecies" "GBIF" "776057" "12233256" "11286021" 1.15 ""
"B_ESCHR_COLI_EXPR" "Escherichia coli expressing" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "expressing" "subspecies" "AmSOD" "GBIF" "776057" "12239548" "11286021" 1.15 ""
"B_ESCHR_DYSN" "Escherichia dysenteriae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "dysenteriae" "" "species" "likely facultative anaerobe" "GBIF" "515602" "10862979" 1.5 ""
"B_ESCHR_FRGS" "Escherichia fergusonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "fergusonii" "" "species" "Farmer et al., 1985" "facultative anaerobe" "LPSN" "776059" "515602" "5427571" 1.15 "72461005"
"B_ESCHR_HRMN" "Escherichia hermannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "hermannii" "" "species" "Brenner et al., 1983" "facultative anaerobe" "LPSN" "776060" "515602" "5427572" 1.5 "85786000"
"B_ESCHR_MRMT" "Escherichia marmotae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "marmotae" "" "species" "Liu et al., 2015" "likely facultative anaerobe" "LPSN" "792928" "515602" "8869052" 1.5 "14961000146107"
"B_ESCHR_RUYS" "Escherichia ruysiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "ruysiae" "" "species" "Van der Putten et al., 2021" "likely facultative anaerobe" "LPSN" "17322" "515602" "11776954" 1.5 ""
"B_ESCHR_VLNR" "Escherichia vulneris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "vulneris" "" "species" "Brenner et al., 1983" "likely facultative anaerobe" "LPSN" "776063" "515602" "796273" "5427573" 1.15 ""
"B_ESCHR" "Escherichia" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "" "" "genus" "Castellani et al., 1919" "facultative anaerobe" "LPSN" "515602" "482" "11158430" 1 "407310004,407251000,407281008,407284000,407283006,407160000,407285004,407159005,407287007,407290001,407291002,407289005,407293004,407222004,407295006,407294005,407297003,407260008,407299000,407300008,407301007,103429008,124994003,407303005,407306002,407305003,407308001,407253002,407254008,407262000,407263005,407265003,407264004,407267006,407269009,407256005,407271009,407199008,407273007,407275000,407258006,407278003,407279006,407277008,407231004,407235008,407234007,407233001,407237000,407239002,407241001,407243003,407245005,407246006,407227005,407229008,715877003,407203008,407161001,407204002,407158002,407207009,407206000,407209007,407211003,407214006,407213000,407219001,407217004,407218009,407216008,407220007,407221006,407224003,407225002,414103002,407197005,407198000,407196001,407202003,407201005,407182007,407184008,407163003,407186005,407190007,407189003,407188006,407192004,407194003,407165005,407169004,407168007,407173001,407172006,407171004,407175008,406629008,406628000,407177000,407179002,407180004,407156003,407157007,116398008,417207000,64735005,713416009"
"B_ESCHR_ADCR" "Escherichia adecarboxylata" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "adecarboxylata" "" "species" "Leclerc, 1962" "likely facultative anaerobe" "LPSN" "776052" "515602" "777447" 1 ""
"B_ESCHR_ALBR" "Escherichia albertii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "albertii" "" "species" "Huys et al., 2003" "facultative anaerobe" "LPSN" "776053" "515602" "5427575" 1 "419388003"
"B_ESCHR_BLTT" "Escherichia blattae" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "blattae" "" "species" "Burgess et al., 1973" "likely facultative anaerobe" "LPSN" "776056" "515602" "788468" 1 ""
"B_ESCHR_COLI" "Escherichia coli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "" "species" "Castellani et al., 1919" "facultative anaerobe" "LPSN" "776057" "515602" "11286021" 1 "1095001000112106,715307006,737528008,416989002,116397003,414097009,414098004,414099007,414100004,116395006,735270003,116396007,83285000,116394005,112283007,710886005,710887001,710888006,710889003,414132004,721892009,416812001,416740004,417216001,457541006,710253004,416530004,417189006,409800005,713925008,444771000124108,838549008"
"B_ESCHR_COLI_COLI" "Escherichia coli coli" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "coli" "subspecies" "GBIF" "776057" "12233256" "11286021" 1 ""
"B_ESCHR_COLI_EXPR" "Escherichia coli expressing" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "coli" "expressing" "subspecies" "AmSOD" "GBIF" "776057" "12239548" "11286021" 1 ""
"B_ESCHR_DYSN" "Escherichia dysenteriae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "dysenteriae" "" "species" "likely facultative anaerobe" "GBIF" "515602" "10862979" 1 ""
"B_ESCHR_FRGS" "Escherichia fergusonii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "fergusonii" "" "species" "Farmer et al., 1985" "facultative anaerobe" "LPSN" "776059" "515602" "5427571" 1 "72461005"
"B_ESCHR_HRMN" "Escherichia hermannii" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "hermannii" "" "species" "Brenner et al., 1983" "facultative anaerobe" "LPSN" "776060" "515602" "5427572" 1 "85786000"
"B_ESCHR_MRMT" "Escherichia marmotae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "marmotae" "" "species" "Liu et al., 2015" "likely facultative anaerobe" "LPSN" "792928" "515602" "8869052" 1 "14961000146107"
"B_ESCHR_RUYS" "Escherichia ruysiae" "accepted" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "ruysiae" "" "species" "Van der Putten et al., 2021" "likely facultative anaerobe" "LPSN" "17322" "515602" "11776954" 1 ""
"B_ESCHR_VLNR" "Escherichia vulneris" "synonym" "Bacteria" "Pseudomonadota" "Gammaproteobacteria" "Enterobacterales" "Enterobacteriaceae" "Escherichia" "vulneris" "" "species" "Brenner et al., 1983" "likely facultative anaerobe" "LPSN" "776063" "515602" "796273" "5427573" 1 ""
"P_ESTST" "Estiastra" "accepted" "Protozoa" "" "" "" "" "Estiastra" "" "" "genus" "Eisenack, 1959" "GBIF" "3208159" "7" 2 ""
"P_ESTST_MAGN" "Estiastra magna" "accepted" "Protozoa" "" "" "" "" "Estiastra" "magna" "" "species" "Eisenack, 1959" "GBIF" "4918097" "3208159" 2 ""
"P_ESTST_MINM" "Estiastra minima" "accepted" "Protozoa" "" "" "" "" "Estiastra" "minima" "" "species" "Volkova, 1969" "GBIF" "4918094" "3208159" 2 ""

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