(v1.2.0.9027) move to github

.github/workflows/check.yaml

@@ -28,10 +28,10 @@ on:
     branches:
       - master
 
-name: R-CMD-check
+name: check
 
 jobs:
-  R-CMD-check:
+  check:
     runs-on: ${{ matrix.config.os }}
 
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
@@ -43,9 +43,9 @@ jobs:
           - {os: windows-latest, r: 'release'}
           - {os: macOS-latest,   r: 'release'}
           - {os: ubuntu-16.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
-          - {os: windows-latest, r: 'oldrel'}
-          - {os: macOS-latest,   r: 'oldrel'}
-          - {os: ubuntu-16.04,   r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          # - {os: windows-latest, r: 'oldrel'}
+          # - {os: macOS-latest,   r: 'oldrel'}
+          # - {os: ubuntu-16.04,   r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
           - {os: windows-latest, r: 'devel'}
           - {os: macOS-latest,   r: 'devel'}
           - {os: ubuntu-16.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}

.github/workflows/codecovr.yaml

@@ -64,5 +64,5 @@ jobs:
         shell: Rscript {0}
 
       - name: Test coverage
-        run: covr::codecov()
+        run: covr::codecov(line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/resistance_predict.R", "R/aa_helper_functions_dplyr.R"))
         shell: Rscript {0}

.github/workflows/lintr.yaml

@@ -62,5 +62,5 @@ jobs:
         shell: Rscript {0}
 
       - name: Lint
-        run: lintr::lint_package()
+        run: lint_package(linters = with_defaults(line_length_linter = NULL, trailing_whitespace_linter = NULL, object_name_linter = NULL, cyclocomp_linter = NULL, object_usage_linter = NULL, object_length_linter = object_length_linter(length = 50L)), exclusions = list("R/aa_helper_functions_dplyr.R"))
         shell: Rscript {0}