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mirror of https://github.com/msberends/AMR.git synced 2025-07-09 17:41:59 +02:00

(v1.3.0.9032) support skimr

This commit is contained in:
2020-09-28 01:08:55 +02:00
parent 22f6ceb3e4
commit 519aada54f
25 changed files with 123 additions and 30 deletions

View File

@ -45,7 +45,6 @@ test_that("joins work", {
expect_true(nrow(unjoined) < nrow(right))
expect_true(nrow(unjoined) < nrow(full))
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI")), 1)
expect_equal(nrow(inner_join_microorganisms("B_ESCHR_COLI", by = c("mo" = "mo"))), 1)

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@ -28,7 +28,6 @@ test_that("rsi works", {
expect_true(as.rsi("I") < as.rsi("R"))
expect_true(is.rsi(as.rsi("S")))
x <- example_isolates$AMX
expect_s3_class(x[1], "rsi")
expect_s3_class(x[[1]], "rsi")
@ -69,6 +68,14 @@ test_that("rsi works", {
expect_error(as.rsi.disk(as.disk(16)))
expect_error(get_guideline("this one does not exist"))
expect_s3_class(example_isolates %>%
mutate(m = as.mic(2),
d = as.disk(20)) %>%
skimr::skim(),
"data.frame")
expect_s3_class(skimr::skim(example_isolates),
"data.frame")
})