mirror of
https://github.com/msberends/AMR.git
synced 2025-07-09 17:02:03 +02:00
cli-147-2043
This commit is contained in:
github-actions
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9049</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9050</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -210,42 +210,44 @@
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 16 64 256 0.002 1 0.001 64 0.25 1 16 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.5 8 8 0.0625 1 0.5 0.025 256 256 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 0.01 1 64 32 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 1 <=0.001 16 <=0.001 1 0.025 8 0.025 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 >=256 16 >=256 16 <=0.001 1 0.005 16 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 32 64 0.25 16 0.125 8 4 </span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 49 47 14 33 49 43 41 41 43 31 20 43 42 11 18 42 8 42 16 25 42 8 15 30 29</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 30 7 9 44 30 41 45 40 7 41 49 10 12 19 28 8 33 48 44 46 44 18 37 50 16</span>
|
||||
<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] I S S I S I I S R S S I I S S I I S I R S S R I S</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] R S S I S I R I R R S I I S S S S R I I I I R I S</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 64 0.025 2 0.25 32 64 0.002 32 0.01 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.125 0.0625 64 128 0.002 128 128 1 0.002 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.005 0.001 4 0.001 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 1 >=64 32 <=0.001 >=64 0.025 32 32 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [10] 0.005 16 1 0.005 4 0.25 8 4 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] 0.01 0.25 0.01 0.25 >=64 0.125 0.125 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 1 >=16 8 1 >=16 >=16 2 1 2 1 1 8 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [16] 1 1 4 2 >=16 >=16 2 4 2 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 8 16 2 2 1 16 8 8 2 2 4 >=32 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 8 1 16 <=0.5 1 >=32 >=32 >=32 8 4 8 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 16 </span>
|
||||
<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 >=8 >=8 0.5 1 1 0.125 0.25 1 2 1 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 >=8 0.25 2 1 1 >=8 0.125 0.5 >=8 0.125 0.25 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] <=0.0625 4 2 <=0.0625 4 1 4 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] 2 4 1 4 0.25 0.25 0.5 0.5 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] <=0.0625 0.5 1 1 0.125 0.125 2 4 </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 45 49 24 46 23 18 15 17 17 28 40 20 21 43 39 9 33 17 8 20 30 21 44 48 41</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 14 39 35 18 41 39 48 44 48 24 26 40 47 10 31 21 31 48 12 24 50 8 25 40 48</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 13 15 11 14 16 16 11 15 11 17 14 15 17 17 16 16 16 12 14 12 15 13 13 13 16</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 11 12 17 14 17 17 13 14 11 13 13 16 16 17 15 13 14 14 15 16 17 11 14 16 14</span>
|
||||
<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 22 23 19 19 23 15 23 18 21 24 22 25 19 19 16 17 17 16 27 21 27 25 15 21 27</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] 17 15 16 16 24 15 27 22 24 19 23 25 21 27 23 27 21 21 27 20 26 24 23 25 18</span>
|
||||
<span class="r-in"><span><span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
Reference in New Issue
Block a user