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- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive

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- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-03-23 14:46:02 +01:00
parent e1e19af625
commit 53464ff1c8
29 changed files with 693 additions and 373 deletions
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19
NAMESPACE
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@ -13,25 +13,27 @@ S3method(summary,mic)
S3method(summary,rsi)
export(EUCAST_rules)
export(abname)
export(anti_join_bactlist)
export(anti_join_microorganisms)
export(as.mic)
export(as.rsi)
export(atc_property)
export(clipboard_export)
export(clipboard_import)
export(first_isolate)
export(full_join_bactlist)
export(full_join_microorganisms)
export(guess_bactid)
export(inner_join_bactlist)
export(inner_join_microorganisms)
export(interpretive_reading)
export(is.mic)
export(is.rsi)
export(key_antibiotics)
export(left_join_bactlist)
export(left_join_microorganisms)
export(mo_property)
export(right_join_bactlist)
export(right_join_microorganisms)
export(rsi)
export(rsi_df)
export(rsi_predict)
export(semi_join_bactlist)
export(semi_join_microorganisms)
exportMethods(as.double.mic)
exportMethods(as.integer.mic)
exportMethods(as.numeric.mic)
@ -48,6 +50,7 @@ importFrom(dplyr,all_vars)
importFrom(dplyr,any_vars)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_at)
importFrom(dplyr,as_tibble)
importFrom(dplyr,between)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
@ -73,5 +76,9 @@ importFrom(graphics,text)
importFrom(reshape2,dcast)
importFrom(rvest,html_nodes)
importFrom(rvest,html_table)
importFrom(utils,object.size)
importFrom(utils,packageDescription)
importFrom(utils,read.delim)
importFrom(utils,write.table)
importFrom(utils,writeClipboard)
importFrom(xml2,read_html)